BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 32038716)

  • 21. RNA-QC-chain: comprehensive and fast quality control for RNA-Seq data.
    Zhou Q; Su X; Jing G; Chen S; Ning K
    BMC Genomics; 2018 Feb; 19(1):144. PubMed ID: 29444661
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A Guide for Designing and Analyzing RNA-Seq Data.
    Chatterjee A; Ahn A; Rodger EJ; Stockwell PA; Eccles MR
    Methods Mol Biol; 2018; 1783():35-80. PubMed ID: 29767357
    [TBL] [Abstract][Full Text] [Related]  

  • 23. fRNAkenseq: a fully powered-by-CyVerse cloud integrated RNA-sequencing analysis tool.
    Hubbard A; Bomhoff M; Schmidt CJ
    PeerJ; 2020; 8():e8592. PubMed ID: 32461821
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
    Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
    BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Interoperable RNA-Seq analysis in the cloud.
    Lachmann A; Clarke DJB; Torre D; Xie Z; Ma'ayan A
    Biochim Biophys Acta Gene Regul Mech; 2020 Jun; 1863(6):194521. PubMed ID: 32156561
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
    Amrit FRG; Ghazi A
    J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Bringing Cell Subpopulation Discovery on a Cloud-HPC Using rCASC and StreamFlow.
    Contaldo SG; Alessandri L; Colonnelli I; Beccuti M; Aldinucci M
    Methods Mol Biol; 2023; 2584():337-345. PubMed ID: 36495459
    [TBL] [Abstract][Full Text] [Related]  

  • 28. UTAP: User-friendly Transcriptome Analysis Pipeline.
    Kohen R; Barlev J; Hornung G; Stelzer G; Feldmesser E; Kogan K; Safran M; Leshkowitz D
    BMC Bioinformatics; 2019 Mar; 20(1):154. PubMed ID: 30909881
    [TBL] [Abstract][Full Text] [Related]  

  • 29. CoGe LoadExp+: A web-based suite that integrates next-generation sequencing data analysis workflows and visualization.
    Grover JW; Bomhoff M; Davey S; Gregory BD; Mosher RA; Lyons E
    Plant Direct; 2017 Jul; 1(2):. PubMed ID: 31240274
    [TBL] [Abstract][Full Text] [Related]  

  • 30. 3'Pool-seq: an optimized cost-efficient and scalable method of whole-transcriptome gene expression profiling.
    Sholder G; Lanz TA; Moccia R; Quan J; Aparicio-Prat E; Stanton R; Xi HS
    BMC Genomics; 2020 Jan; 21(1):64. PubMed ID: 31959126
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Improved RNA-seq Workflows Using CyVerse Cyberinfrastructure.
    Chougule KM; Wang L; Stein JC; Wang X; Devisetty UK; Klein RR; Ware D
    Curr Protoc Bioinformatics; 2018 Sep; 63(1):e53. PubMed ID: 30168903
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SeqAssist: a novel toolkit for preliminary analysis of next-generation sequencing data.
    Peng Y; Maxwell AS; Barker ND; Laird JG; Kennedy AJ; Wang N; Zhang C; Gong P
    BMC Bioinformatics; 2014; 15 Suppl 11(Suppl 11):S10. PubMed ID: 25349885
    [TBL] [Abstract][Full Text] [Related]  

  • 33. RASflow: an RNA-Seq analysis workflow with Snakemake.
    Zhang X; Jonassen I
    BMC Bioinformatics; 2020 Mar; 21(1):110. PubMed ID: 32183729
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Yabi: An online research environment for grid, high performance and cloud computing.
    Hunter AA; Macgregor AB; Szabo TO; Wellington CA; Bellgard MI
    Source Code Biol Med; 2012 Feb; 7(1):1. PubMed ID: 22333270
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq.
    Williams CR; Baccarella A; Parrish JZ; Kim CC
    BMC Bioinformatics; 2017 Jan; 18(1):38. PubMed ID: 28095772
    [TBL] [Abstract][Full Text] [Related]  

  • 36. QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization.
    Zhao S; Xi L; Quan J; Xi H; Zhang Y; von Schack D; Vincent M; Zhang B
    BMC Genomics; 2016 Jan; 17():39. PubMed ID: 26747388
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Stormbow: A Cloud-Based Tool for Reads Mapping and Expression Quantification in Large-Scale RNA-Seq Studies.
    Zhao S; Prenger K; Smith L
    ISRN Bioinform; 2013; 2013():481545. PubMed ID: 25937948
    [TBL] [Abstract][Full Text] [Related]  

  • 38. PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
    Liu Y; Khan SM; Wang J; Rynge M; Zhang Y; Zeng S; Chen S; Maldonado Dos Santos JV; Valliyodan B; Calyam PP; Merchant N; Nguyen HT; Xu D; Joshi T
    BMC Bioinformatics; 2016 Oct; 17(Suppl 13):337. PubMed ID: 27766951
    [TBL] [Abstract][Full Text] [Related]  

  • 39. TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data.
    Clark LV; Sacks EJ
    Source Code Biol Med; 2016; 11():11. PubMed ID: 27408618
    [TBL] [Abstract][Full Text] [Related]  

  • 40. BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation.
    Gadepalli VS; Ozer HG; Yilmaz AS; Pietrzak M; Webb A
    BMC Bioinformatics; 2019 Dec; 20(Suppl 24):670. PubMed ID: 31861980
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.