These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

309 related articles for article (PubMed ID: 32039704)

  • 1. STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency.
    Islam M; Sarker K; Das T; Reaz R; Bayzid MS
    BMC Genomics; 2020 Feb; 21(1):136. PubMed ID: 32039704
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The performance of coalescent-based species tree estimation methods under models of missing data.
    Nute M; Chou J; Molloy EK; Warnow T
    BMC Genomics; 2018 May; 19(Suppl 5):286. PubMed ID: 29745854
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ASTRAL: genome-scale coalescent-based species tree estimation.
    Mirarab S; Reaz R; Bayzid MS; Zimmermann T; Swenson MS; Warnow T
    Bioinformatics; 2014 Sep; 30(17):i541-8. PubMed ID: 25161245
    [TBL] [Abstract][Full Text] [Related]  

  • 4. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
    Molloy EK; Warnow T
    Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A comparative study of SVDquartets and other coalescent-based species tree estimation methods.
    Chou J; Gupta A; Yaduvanshi S; Davidson R; Nute M; Mirarab S; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S2. PubMed ID: 26449249
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Coalescent-Based Analyses of Genomic Sequence Data Provide a Robust Resolution of Phylogenetic Relationships among Major Groups of Gibbons.
    Shi CM; Yang Z
    Mol Biol Evol; 2018 Jan; 35(1):159-179. PubMed ID: 29087487
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses.
    Bayzid MS; Mirarab S; Boussau B; Warnow T
    PLoS One; 2015; 10(6):e0129183. PubMed ID: 26086579
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ASTRID: Accurate Species TRees from Internode Distances.
    Vachaspati P; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S3. PubMed ID: 26449326
    [TBL] [Abstract][Full Text] [Related]  

  • 9. wQFM: highly accurate genome-scale species tree estimation from weighted quartets.
    Mahbub M; Wahab Z; Reaz R; Rahman MS; Bayzid MS
    Bioinformatics; 2021 Nov; 37(21):3734-3743. PubMed ID: 34086858
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies.
    Sayyari E; Mirarab S
    Mol Biol Evol; 2016 Jul; 33(7):1654-68. PubMed ID: 27189547
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Evaluating Summary Methods for Multilocus Species Tree Estimation in the Presence of Incomplete Lineage Sorting.
    Mirarab S; Bayzid MS; Warnow T
    Syst Biol; 2016 May; 65(3):366-80. PubMed ID: 25164915
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer.
    Davidson R; Vachaspati P; Mirarab S; Warnow T
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S1. PubMed ID: 26450506
    [TBL] [Abstract][Full Text] [Related]  

  • 13. On the Robustness to Gene Tree Estimation Error (or lack thereof) of Coalescent-Based Species Tree Methods.
    Roch S; Warnow T
    Syst Biol; 2015 Jul; 64(4):663-76. PubMed ID: 25813358
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A maximum pseudo-likelihood approach for estimating species trees under the coalescent model.
    Liu L; Yu L; Edwards SV
    BMC Evol Biol; 2010 Oct; 10():302. PubMed ID: 20937096
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Bayesian-Weighted Triplet and Quartet Methods for Species Tree Inference.
    Richards A; Kubatko L
    Bull Math Biol; 2021 Jul; 83(9):93. PubMed ID: 34297209
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers.
    Carstens BC; Knowles LL
    Syst Biol; 2007 Jun; 56(3):400-11. PubMed ID: 17520504
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BBCA: Improving the scalability of *BEAST using random binning.
    Zimmermann T; Mirarab S; Warnow T
    BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S11. PubMed ID: 25572469
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Theoretical and Practical Considerations when using Retroelement Insertions to Estimate Species Trees in the Anomaly Zone.
    Molloy EK; Gatesy J; Springer MS
    Syst Biol; 2022 Apr; 71(3):721-740. PubMed ID: 34677617
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Statistical binning enables an accurate coalescent-based estimation of the avian tree.
    Mirarab S; Bayzid MS; Boussau B; Warnow T
    Science; 2014 Dec; 346(6215):1250463. PubMed ID: 25504728
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Disk covering methods improve phylogenomic analyses.
    Bayzid MS; Hunt T; Warnow T
    BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S7. PubMed ID: 25572610
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.