These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
168 related articles for article (PubMed ID: 32051612)
1. Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP). Gryder BE; Khan J; Stanton BZ Nat Protoc; 2020 Mar; 15(3):1209-1236. PubMed ID: 32051612 [TBL] [Abstract][Full Text] [Related]
2. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments. Juric I; Yu M; Abnousi A; Raviram R; Fang R; Zhao Y; Zhang Y; Qiu Y; Yang Y; Li Y; Ren B; Hu M PLoS Comput Biol; 2019 Apr; 15(4):e1006982. PubMed ID: 30986246 [TBL] [Abstract][Full Text] [Related]
3. Identification of significant chromatin contacts from HiChIP data by FitHiChIP. Bhattacharyya S; Chandra V; Vijayanand P; Ay F Nat Commun; 2019 Sep; 10(1):4221. PubMed ID: 31530818 [TBL] [Abstract][Full Text] [Related]
4. High resolution discovery of chromatin interactions. Guo Y; Krismer K; Closser M; Wichterle H; Gifford DK Nucleic Acids Res; 2019 Apr; 47(6):e35. PubMed ID: 30953075 [TBL] [Abstract][Full Text] [Related]
5. Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation. Goh Y; Fullwood MJ; Poh HM; Peh SQ; Ong CT; Zhang J; Ruan X; Ruan Y J Vis Exp; 2012 Apr; (62):. PubMed ID: 22564980 [TBL] [Abstract][Full Text] [Related]
6. Assessing Specific Networks of Chromatin Interactions with HiChIP. Di Giammartino DC; Polyzos A; Apostolou E Methods Mol Biol; 2022; 2532():113-141. PubMed ID: 35867248 [TBL] [Abstract][Full Text] [Related]
7. Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET). Choy J; Fullwood MJ Methods Mol Biol; 2017; 1468():63-89. PubMed ID: 27662871 [TBL] [Abstract][Full Text] [Related]
8. Protocol to capture transcription factor-mediated 3D chromatin interactions using affinity tag-based BL-HiChIP. Ren R; Hua Y; Wang H STAR Protoc; 2023 Dec; 4(4):102589. PubMed ID: 37738118 [TBL] [Abstract][Full Text] [Related]
9. HiChIP-Peaks: a HiChIP peak calling algorithm. Shi C; Rattray M; Orozco G Bioinformatics; 2020 Jun; 36(12):3625-3631. PubMed ID: 32207529 [TBL] [Abstract][Full Text] [Related]
10. HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets. Rosen JD; Yang Y; Abnousi A; Chen J; Song M; Jones IR; Shen Y; Hu M; Li Y Curr Issues Mol Biol; 2021 Sep; 43(2):1156-1170. PubMed ID: 34563051 [TBL] [Abstract][Full Text] [Related]
11. HiChIP: efficient and sensitive analysis of protein-directed genome architecture. Mumbach MR; Rubin AJ; Flynn RA; Dai C; Khavari PA; Greenleaf WJ; Chang HY Nat Methods; 2016 Nov; 13(11):919-922. PubMed ID: 27643841 [TBL] [Abstract][Full Text] [Related]
12. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues. Buisine N; Ruan X; Ruan Y; Sachs LM Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563 [TBL] [Abstract][Full Text] [Related]
13. Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions. Li X; Luo OJ; Wang P; Zheng M; Wang D; Piecuch E; Zhu JJ; Tian SZ; Tang Z; Li G; Ruan Y Nat Protoc; 2017 May; 12(5):899-915. PubMed ID: 28358394 [TBL] [Abstract][Full Text] [Related]
14. Analysis of Chromatin Interactions Mediated by Specific Architectural Proteins in Drosophila Cells. Ando-Kuri M; Rivera ISM; Rowley MJ; Corces VG Methods Mol Biol; 2018; 1766():239-256. PubMed ID: 29605857 [TBL] [Abstract][Full Text] [Related]
15. ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Schmidt D; Wilson MD; Spyrou C; Brown GD; Hadfield J; Odom DT Methods; 2009 Jul; 48(3):240-8. PubMed ID: 19275939 [TBL] [Abstract][Full Text] [Related]
16. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data. Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017 [TBL] [Abstract][Full Text] [Related]
17. Analysis of HiChIP Data. Dori M; Forcato M Methods Mol Biol; 2022; 2301():209-234. PubMed ID: 34415538 [TBL] [Abstract][Full Text] [Related]
18. HiChIPdb: a comprehensive database of HiChIP regulatory interactions. Zeng W; Liu Q; Yin Q; Jiang R; Wong WH Nucleic Acids Res; 2023 Jan; 51(D1):D159-D166. PubMed ID: 36215037 [TBL] [Abstract][Full Text] [Related]
19. Multiplex chromatin interactions with single-molecule precision. Zheng M; Tian SZ; Capurso D; Kim M; Maurya R; Lee B; Piecuch E; Gong L; Zhu JJ; Li Z; Wong CH; Ngan CY; Wang P; Ruan X; Wei CL; Ruan Y Nature; 2019 Feb; 566(7745):558-562. PubMed ID: 30778195 [TBL] [Abstract][Full Text] [Related]
20. Proximity Ligation-Assisted ChIP-Seq (PLAC-Seq). Yu M; Juric I; Abnousi A; Hu M; Ren B Methods Mol Biol; 2021; 2351():181-199. PubMed ID: 34382190 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]