173 related articles for article (PubMed ID: 32051612)
1. Measurement of differential chromatin interactions with absolute quantification of architecture (AQuA-HiChIP).
Gryder BE; Khan J; Stanton BZ
Nat Protoc; 2020 Mar; 15(3):1209-1236. PubMed ID: 32051612
[TBL] [Abstract][Full Text] [Related]
2. MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.
Juric I; Yu M; Abnousi A; Raviram R; Fang R; Zhao Y; Zhang Y; Qiu Y; Yang Y; Li Y; Ren B; Hu M
PLoS Comput Biol; 2019 Apr; 15(4):e1006982. PubMed ID: 30986246
[TBL] [Abstract][Full Text] [Related]
3. Identification of significant chromatin contacts from HiChIP data by FitHiChIP.
Bhattacharyya S; Chandra V; Vijayanand P; Ay F
Nat Commun; 2019 Sep; 10(1):4221. PubMed ID: 31530818
[TBL] [Abstract][Full Text] [Related]
4. High resolution discovery of chromatin interactions.
Guo Y; Krismer K; Closser M; Wichterle H; Gifford DK
Nucleic Acids Res; 2019 Apr; 47(6):e35. PubMed ID: 30953075
[TBL] [Abstract][Full Text] [Related]
5. Chromatin Interaction Analysis with Paired-End Tag Sequencing (ChIA-PET) for mapping chromatin interactions and understanding transcription regulation.
Goh Y; Fullwood MJ; Poh HM; Peh SQ; Ong CT; Zhang J; Ruan X; Ruan Y
J Vis Exp; 2012 Apr; (62):. PubMed ID: 22564980
[TBL] [Abstract][Full Text] [Related]
6. Assessing Specific Networks of Chromatin Interactions with HiChIP.
Di Giammartino DC; Polyzos A; Apostolou E
Methods Mol Biol; 2022; 2532():113-141. PubMed ID: 35867248
[TBL] [Abstract][Full Text] [Related]
7. Deciphering Noncoding RNA and Chromatin Interactions: Multiplex Chromatin Interaction Analysis by Paired-End Tag Sequencing (mChIA-PET).
Choy J; Fullwood MJ
Methods Mol Biol; 2017; 1468():63-89. PubMed ID: 27662871
[TBL] [Abstract][Full Text] [Related]
8. Protocol to capture transcription factor-mediated 3D chromatin interactions using affinity tag-based BL-HiChIP.
Ren R; Hua Y; Wang H
STAR Protoc; 2023 Dec; 4(4):102589. PubMed ID: 37738118
[TBL] [Abstract][Full Text] [Related]
9. HiChIP-Peaks: a HiChIP peak calling algorithm.
Shi C; Rattray M; Orozco G
Bioinformatics; 2020 Jun; 36(12):3625-3631. PubMed ID: 32207529
[TBL] [Abstract][Full Text] [Related]
10. HPRep: Quantifying Reproducibility in HiChIP and PLAC-Seq Datasets.
Rosen JD; Yang Y; Abnousi A; Chen J; Song M; Jones IR; Shen Y; Hu M; Li Y
Curr Issues Mol Biol; 2021 Sep; 43(2):1156-1170. PubMed ID: 34563051
[TBL] [Abstract][Full Text] [Related]
11. HiChIP: efficient and sensitive analysis of protein-directed genome architecture.
Mumbach MR; Rubin AJ; Flynn RA; Dai C; Khavari PA; Greenleaf WJ; Chang HY
Nat Methods; 2016 Nov; 13(11):919-922. PubMed ID: 27643841
[TBL] [Abstract][Full Text] [Related]
12. Chromatin Immunoprecipitation for Chromatin Interaction Analysis Using Paired-End-Tag (ChIA-PET) Sequencing in Tadpole Tissues.
Buisine N; Ruan X; Ruan Y; Sachs LM
Cold Spring Harb Protoc; 2018 Aug; 2018(8):. PubMed ID: 29895563
[TBL] [Abstract][Full Text] [Related]
13. Long-read ChIA-PET for base-pair-resolution mapping of haplotype-specific chromatin interactions.
Li X; Luo OJ; Wang P; Zheng M; Wang D; Piecuch E; Zhu JJ; Tian SZ; Tang Z; Li G; Ruan Y
Nat Protoc; 2017 May; 12(5):899-915. PubMed ID: 28358394
[TBL] [Abstract][Full Text] [Related]
14. Analysis of Chromatin Interactions Mediated by Specific Architectural Proteins in Drosophila Cells.
Ando-Kuri M; Rivera ISM; Rowley MJ; Corces VG
Methods Mol Biol; 2018; 1766():239-256. PubMed ID: 29605857
[TBL] [Abstract][Full Text] [Related]
15. ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions.
Schmidt D; Wilson MD; Spyrou C; Brown GD; Hadfield J; Odom DT
Methods; 2009 Jul; 48(3):240-8. PubMed ID: 19275939
[TBL] [Abstract][Full Text] [Related]
16. Native internally calibrated chromatin immunoprecipitation for quantitative studies of histone post-translational modifications.
Grzybowski AT; Shah RN; Richter WF; Ruthenburg AJ
Nat Protoc; 2019 Dec; 14(12):3275-3302. PubMed ID: 31723301
[TBL] [Abstract][Full Text] [Related]
17. HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.
Yan H; Evans J; Kalmbach M; Moore R; Middha S; Luban S; Wang L; Bhagwate A; Li Y; Sun Z; Chen X; Kocher JP
BMC Bioinformatics; 2014 Aug; 15(1):280. PubMed ID: 25128017
[TBL] [Abstract][Full Text] [Related]
18. Analysis of HiChIP Data.
Dori M; Forcato M
Methods Mol Biol; 2022; 2301():209-234. PubMed ID: 34415538
[TBL] [Abstract][Full Text] [Related]
19. HiChIPdb: a comprehensive database of HiChIP regulatory interactions.
Zeng W; Liu Q; Yin Q; Jiang R; Wong WH
Nucleic Acids Res; 2023 Jan; 51(D1):D159-D166. PubMed ID: 36215037
[TBL] [Abstract][Full Text] [Related]
20. Multiplex chromatin interactions with single-molecule precision.
Zheng M; Tian SZ; Capurso D; Kim M; Maurya R; Lee B; Piecuch E; Gong L; Zhu JJ; Li Z; Wong CH; Ngan CY; Wang P; Ruan X; Wei CL; Ruan Y
Nature; 2019 Feb; 566(7745):558-562. PubMed ID: 30778195
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
