BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

188 related articles for article (PubMed ID: 32054859)

  • 1. Inference and effects of barcode multiplets in droplet-based single-cell assays.
    Lareau CA; Ma S; Duarte FM; Buenrostro JD
    Nat Commun; 2020 Feb; 11(1):866. PubMed ID: 32054859
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads.
    De Rop FV; Ismail JN; Bravo González-Blas C; Hulselmans GJ; Flerin CC; Janssens J; Theunis K; Christiaens VM; Wouters J; Marcassa G; de Wit J; Poovathingal S; Aerts S
    Elife; 2022 Feb; 11():. PubMed ID: 35195064
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Development of a program for in silico optimized selection of oligonucleotide-based molecular barcodes.
    Yang IS; Bae SW; Park B; Kim S
    PLoS One; 2021; 16(2):e0246354. PubMed ID: 33600481
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Modular barcode beads for microfluidic single cell genomics.
    Delley CL; Abate AR
    Sci Rep; 2021 May; 11(1):10857. PubMed ID: 34035349
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data.
    Wolock SL; Lopez R; Klein AM
    Cell Syst; 2019 Apr; 8(4):281-291.e9. PubMed ID: 30954476
    [TBL] [Abstract][Full Text] [Related]  

  • 6. dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments.
    Petukhov V; Guo J; Baryawno N; Severe N; Scadden DT; Samsonova MG; Kharchenko PV
    Genome Biol; 2018 Jun; 19(1):78. PubMed ID: 29921301
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Limitations and challenges of genetic barcode quantification.
    Thielecke L; Aranyossy T; Dahl A; Tiwari R; Roeder I; Geiger H; Fehse B; Glauche I; Cornils K
    Sci Rep; 2017 Mar; 7():43249. PubMed ID: 28256524
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems.
    Zhang X; Li T; Liu F; Chen Y; Yao J; Li Z; Huang Y; Wang J
    Mol Cell; 2019 Jan; 73(1):130-142.e5. PubMed ID: 30472192
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Detection and removal of barcode swapping in single-cell RNA-seq data.
    Griffiths JA; Richard AC; Bach K; Lun ATL; Marioni JC
    Nat Commun; 2018 Jul; 9(1):2667. PubMed ID: 29991676
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.
    Zhang F; Christiansen L; Thomas J; Pokholok D; Jackson R; Morrell N; Zhao Y; Wiley M; Welch E; Jaeger E; Granat A; Norberg SJ; Halpern A; C Rogert M; Ronaghi M; Shendure J; Gormley N; Gunderson KL; Steemers FJ
    Nat Biotechnol; 2017 Sep; 35(9):852-857. PubMed ID: 28650462
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Constructing DNA Barcode Sets Based on Particle Swarm Optimization.
    Wang B; Zheng X; Zhou S; Zhou C; Wei X; Zhang Q; Wei Z
    IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):999-1002. PubMed ID: 28287980
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis.
    Riaz T; Shehzad W; Viari A; Pompanon F; Taberlet P; Coissac E
    Nucleic Acids Res; 2011 Nov; 39(21):e145. PubMed ID: 21930509
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BARCOSEL: a tool for selecting an optimal barcode set for high-throughput sequencing.
    Somervuo P; Koskinen P; Mei P; Holm L; Auvinen P; Paulin L
    BMC Bioinformatics; 2018 Jul; 19(1):257. PubMed ID: 29976145
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A DNA mini-barcode for land plants.
    Little DP
    Mol Ecol Resour; 2014 May; 14(3):437-46. PubMed ID: 24286499
    [TBL] [Abstract][Full Text] [Related]  

  • 15. The efficacy and further functional advantages of random-base molecular barcodes for absolute and digital quantification of nucleic acid molecules.
    Ogawa T; Kryukov K; Imanishi T; Shiroguchi K
    Sci Rep; 2017 Oct; 7(1):13576. PubMed ID: 29051542
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Extracting, filtering and simulating cellular barcodes using CellBarcode tools.
    Sun W; Perkins M; Huyghe M; Faraldo MM; Fre S; Perié L; Lyne AM
    Nat Comput Sci; 2024 Feb; 4(2):128-143. PubMed ID: 38374363
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Polylox barcoding reveals haematopoietic stem cell fates realized in vivo.
    Pei W; Feyerabend TB; Rössler J; Wang X; Postrach D; Busch K; Rode I; Klapproth K; Dietlein N; Quedenau C; Chen W; Sauer S; Wolf S; Höfer T; Rodewald HR
    Nature; 2017 Aug; 548(7668):456-460. PubMed ID: 28813413
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Slide-tags enables single-nucleus barcoding for multimodal spatial genomics.
    Russell AJC; Weir JA; Nadaf NM; Shabet M; Kumar V; Kambhampati S; Raichur R; Marrero GJ; Liu S; Balderrama KS; Vanderburg CR; Shanmugam V; Tian L; Iorgulescu JB; Yoon CH; Wu CJ; Macosko EZ; Chen F
    Nature; 2024 Jan; 625(7993):101-109. PubMed ID: 38093010
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Targeting individual cells by barcode in pooled sequence libraries.
    Ranu N; Villani AC; Hacohen N; Blainey PC
    Nucleic Acids Res; 2019 Jan; 47(1):e4. PubMed ID: 30256981
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Single-cell barcode analysis provides a rapid readout of cellular signaling pathways in clinical specimens.
    Giedt RJ; Pathania D; Carlson JCT; McFarland PJ; Del Castillo AF; Juric D; Weissleder R
    Nat Commun; 2018 Oct; 9(1):4550. PubMed ID: 30382095
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.