BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

192 related articles for article (PubMed ID: 32076047)

  • 1. Evaluating the significance of contact maps in low-homology protein modeling using contact-assisted threading.
    Bhattacharya S; Bhattacharya D
    Sci Rep; 2020 Feb; 10(1):2908. PubMed ID: 32076047
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Does inclusion of residue-residue contact information boost protein threading?
    Bhattacharya S; Bhattacharya D
    Proteins; 2019 Jul; 87(7):596-606. PubMed ID: 30882932
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model.
    Wang S; Sun S; Li Z; Zhang R; Xu J
    PLoS Comput Biol; 2017 Jan; 13(1):e1005324. PubMed ID: 28056090
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Contact-Assisted Threading in Low-Homology Protein Modeling.
    Bhattacharya S; Roche R; Shuvo MH; Moussad B; Bhattacharya D
    Methods Mol Biol; 2023; 2627():41-59. PubMed ID: 36959441
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CATHER: a novel threading algorithm with predicted contacts.
    Du Z; Pan S; Wu Q; Peng Z; Yang J
    Bioinformatics; 2020 Apr; 36(7):2119-2125. PubMed ID: 31790141
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting distant-homology protein structures by aligning deep neural-network based contact maps.
    Zheng W; Wuyun Q; Li Y; Mortuza SM; Zhang C; Pearce R; Ruan J; Zhang Y
    PLoS Comput Biol; 2019 Oct; 15(10):e1007411. PubMed ID: 31622328
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Improving residue-residue contact prediction via low-rank and sparse decomposition of residue correlation matrix.
    Zhang H; Gao Y; Deng M; Wang C; Zhu J; Li SC; Zheng WM; Bu D
    Biochem Biophys Res Commun; 2016 Mar; 472(1):217-22. PubMed ID: 26920058
    [TBL] [Abstract][Full Text] [Related]  

  • 8. LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins.
    Zheng W; Zhang C; Wuyun Q; Pearce R; Li Y; Zhang Y
    Nucleic Acids Res; 2019 Jul; 47(W1):W429-W436. PubMed ID: 31081035
    [TBL] [Abstract][Full Text] [Related]  

  • 9. eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.
    Brylinski M; Lingam D
    PLoS One; 2012; 7(11):e50200. PubMed ID: 23185577
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein tertiary structure modeling driven by deep learning and contact distance prediction in CASP13.
    Hou J; Wu T; Cao R; Cheng J
    Proteins; 2019 Dec; 87(12):1165-1178. PubMed ID: 30985027
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Analysis of distance-based protein structure prediction by deep learning in CASP13.
    Xu J; Wang S
    Proteins; 2019 Dec; 87(12):1069-1081. PubMed ID: 31471916
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Deep-learning contact-map guided protein structure prediction in CASP13.
    Zheng W; Li Y; Zhang C; Pearce R; Mortuza SM; Zhang Y
    Proteins; 2019 Dec; 87(12):1149-1164. PubMed ID: 31365149
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Template-based prediction of protein structure with deep learning.
    Zhang H; Shen Y
    BMC Genomics; 2020 Dec; 21(Suppl 11):878. PubMed ID: 33372607
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Low-homology protein threading.
    Peng J; Xu J
    Bioinformatics; 2010 Jun; 26(12):i294-300. PubMed ID: 20529920
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DisCovER: distance- and orientation-based covariational threading for weakly homologous proteins.
    Bhattacharya S; Roche R; Moussad B; Bhattacharya D
    Proteins; 2022 Feb; 90(2):579-588. PubMed ID: 34599831
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Template-based and free modeling of I-TASSER and QUARK pipelines using predicted contact maps in CASP12.
    Zhang C; Mortuza SM; He B; Wang Y; Zhang Y
    Proteins; 2018 Mar; 86 Suppl 1(Suppl 1):136-151. PubMed ID: 29082551
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Ab initio and template-based prediction of multi-class distance maps by two-dimensional recursive neural networks.
    Walsh I; BaĆ¹ D; Martin AJ; Mooney C; Vullo A; Pollastri G
    BMC Struct Biol; 2009 Jan; 9():5. PubMed ID: 19183478
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein threading using residue co-variation and deep learning.
    Zhu J; Wang S; Bu D; Xu J
    Bioinformatics; 2018 Jul; 34(13):i263-i273. PubMed ID: 29949980
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Improving threading algorithms for remote homology modeling by combining fragment and template comparisons.
    Zhou H; Skolnick J
    Proteins; 2010 Jul; 78(9):2041-8. PubMed ID: 20455261
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
    Skolnick J; Kihara D; Zhang Y
    Proteins; 2004 Aug; 56(3):502-18. PubMed ID: 15229883
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.