192 related articles for article (PubMed ID: 32076047)
21. A comprehensive assessment of sequence-based and template-based methods for protein contact prediction.
Wu S; Zhang Y
Bioinformatics; 2008 Apr; 24(7):924-31. PubMed ID: 18296462
[TBL] [Abstract][Full Text] [Related]
22. Recent Advances in Protein Homology Detection Propelled by Inter-Residue Interaction Map Threading.
Bhattacharya S; Roche R; Shuvo MH; Bhattacharya D
Front Mol Biosci; 2021; 8():643752. PubMed ID: 34046429
[TBL] [Abstract][Full Text] [Related]
23. Toward an accurate prediction of inter-residue distances in proteins using 2D recursive neural networks.
Kukic P; Mirabello C; Tradigo G; Walsh I; Veltri P; Pollastri G
BMC Bioinformatics; 2014 Jan; 15():6. PubMed ID: 24410833
[TBL] [Abstract][Full Text] [Related]
24. PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.
Jones DT; Buchan DW; Cozzetto D; Pontil M
Bioinformatics; 2012 Jan; 28(2):184-90. PubMed ID: 22101153
[TBL] [Abstract][Full Text] [Related]
25. Improvement in low-homology template-based modeling by employing a model evaluation method with focus on topology.
Dai W; Song T; Wang X; Jin X; Deng L; Wu A; Jiang T
PLoS One; 2014; 9(2):e89935. PubMed ID: 24587135
[TBL] [Abstract][Full Text] [Related]
26. ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs.
Kong L; Ju F; Zheng WM; Zhu J; Sun S; Xu J; Bu D
J Comput Biol; 2022 Feb; 29(2):92-105. PubMed ID: 35073170
[TBL] [Abstract][Full Text] [Related]
27. Template-based protein structure prediction in CASP11 and retrospect of I-TASSER in the last decade.
Yang J; Zhang W; He B; Walker SE; Zhang H; Govindarajoo B; Virtanen J; Xue Z; Shen HB; Zhang Y
Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):233-46. PubMed ID: 26343917
[TBL] [Abstract][Full Text] [Related]
28. Hybridized distance- and contact-based hierarchical structure modeling for folding soluble and membrane proteins.
Roche R; Bhattacharya S; Bhattacharya D
PLoS Comput Biol; 2021 Feb; 17(2):e1008753. PubMed ID: 33621244
[TBL] [Abstract][Full Text] [Related]
29. A sparse autoencoder-based deep neural network for protein solvent accessibility and contact number prediction.
Deng L; Fan C; Zeng Z
BMC Bioinformatics; 2017 Dec; 18(Suppl 16):569. PubMed ID: 29297299
[TBL] [Abstract][Full Text] [Related]
30. Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement.
Kolinski A; Betancourt MR; Kihara D; Rotkiewicz P; Skolnick J
Proteins; 2001 Aug; 44(2):133-49. PubMed ID: 11391776
[TBL] [Abstract][Full Text] [Related]
31. ResPRE: high-accuracy protein contact prediction by coupling precision matrix with deep residual neural networks.
Li Y; Hu J; Zhang C; Yu DJ; Zhang Y
Bioinformatics; 2019 Nov; 35(22):4647-4655. PubMed ID: 31070716
[TBL] [Abstract][Full Text] [Related]
32. Benchmarking of dimeric threading and structure refinement.
Grimm V; Zhang Y; Skolnick J
Proteins; 2006 May; 63(3):457-65. PubMed ID: 16463265
[TBL] [Abstract][Full Text] [Related]
33. MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.
Jones DT; Singh T; Kosciolek T; Tetchner S
Bioinformatics; 2015 Apr; 31(7):999-1006. PubMed ID: 25431331
[TBL] [Abstract][Full Text] [Related]
34. FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition.
Wang C; Zhang H; Zheng WM; Xu D; Zhu J; Wang B; Ning K; Sun S; Li SC; Bu D
Bioinformatics; 2016 Feb; 32(3):462-4. PubMed ID: 26454278
[TBL] [Abstract][Full Text] [Related]
35. Improving accuracy of protein contact prediction using balanced network deconvolution.
Sun HP; Huang Y; Wang XF; Zhang Y; Shen HB
Proteins; 2015 Mar; 83(3):485-96. PubMed ID: 25524593
[TBL] [Abstract][Full Text] [Related]
36. DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins.
Zhang C; Zheng W; Mortuza SM; Li Y; Zhang Y
Bioinformatics; 2020 Apr; 36(7):2105-2112. PubMed ID: 31738385
[TBL] [Abstract][Full Text] [Related]
37. DNCON2: improved protein contact prediction using two-level deep convolutional neural networks.
Adhikari B; Hou J; Cheng J
Bioinformatics; 2018 May; 34(9):1466-1472. PubMed ID: 29228185
[TBL] [Abstract][Full Text] [Related]
38. Ab initio and homology based prediction of protein domains by recursive neural networks.
Walsh I; Martin AJ; Mooney C; Rubagotti E; Vullo A; Pollastri G
BMC Bioinformatics; 2009 Jun; 10():195. PubMed ID: 19558651
[TBL] [Abstract][Full Text] [Related]
39. RaptorX: exploiting structure information for protein alignment by statistical inference.
Peng J; Xu J
Proteins; 2011; 79 Suppl 10(Suppl 10):161-71. PubMed ID: 21987485
[TBL] [Abstract][Full Text] [Related]
40. LOMETS: a local meta-threading-server for protein structure prediction.
Wu S; Zhang Y
Nucleic Acids Res; 2007; 35(10):3375-82. PubMed ID: 17478507
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]