262 related articles for article (PubMed ID: 32091572)
1. PlasGUN: gene prediction in plasmid metagenomic short reads using deep learning.
Fang Z; Tan J; Wu S; Li M; Wang C; Liu Y; Zhu H
Bioinformatics; 2020 May; 36(10):3239-3241. PubMed ID: 32091572
[TBL] [Abstract][Full Text] [Related]
2. PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.
Fang Z; Tan J; Wu S; Li M; Xu C; Xie Z; Zhu H
Gigascience; 2019 Jun; 8(6):. PubMed ID: 31220250
[TBL] [Abstract][Full Text] [Related]
3. LncADeep: an ab initio lncRNA identification and functional annotation tool based on deep learning.
Yang C; Yang L; Zhou M; Xie H; Zhang C; Wang MD; Zhu H
Bioinformatics; 2018 Nov; 34(22):3825-3834. PubMed ID: 29850816
[TBL] [Abstract][Full Text] [Related]
4. Prediction of interresidue contacts with DeepMetaPSICOV in CASP13.
Kandathil SM; Greener JG; Jones DT
Proteins; 2019 Dec; 87(12):1092-1099. PubMed ID: 31298436
[TBL] [Abstract][Full Text] [Related]
5. Deep learning models for bacteria taxonomic classification of metagenomic data.
Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
[TBL] [Abstract][Full Text] [Related]
6. DeepPhos: prediction of protein phosphorylation sites with deep learning.
Luo F; Wang M; Liu Y; Zhao XM; Li A
Bioinformatics; 2019 Aug; 35(16):2766-2773. PubMed ID: 30601936
[TBL] [Abstract][Full Text] [Related]
7. Learning transferable deep convolutional neural networks for the classification of bacterial virulence factors.
Zheng D; Pang G; Liu B; Chen L; Yang J
Bioinformatics; 2020 Jun; 36(12):3693-3702. PubMed ID: 32251507
[TBL] [Abstract][Full Text] [Related]
8. HoPhage: an ab initio tool for identifying hosts of phage fragments from metaviromes.
Tan J; Fang Z; Wu S; Guo Q; Jiang X; Zhu H
Bioinformatics; 2022 Jan; 38(2):543-545. PubMed ID: 34383025
[TBL] [Abstract][Full Text] [Related]
9. MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes.
Zhou W; Li R; Yuan S; Liu C; Yao S; Luo J; Niu B
Bioinformatics; 2017 Apr; 33(7):1090-1092. PubMed ID: 28065898
[TBL] [Abstract][Full Text] [Related]
10. ToxDL: deep learning using primary structure and domain embeddings for assessing protein toxicity.
Pan X; Zuallaert J; Wang X; Shen HB; Campos EP; Marushchak DO; De Neve W
Bioinformatics; 2021 Jan; 36(21):5159-5168. PubMed ID: 32692832
[TBL] [Abstract][Full Text] [Related]
11. Virtifier: a deep learning-based identifier for viral sequences from metagenomes.
Miao Y; Liu F; Hou T; Liu Y
Bioinformatics; 2022 Feb; 38(5):1216-1222. PubMed ID: 34908121
[TBL] [Abstract][Full Text] [Related]
12. Off-target predictions in CRISPR-Cas9 gene editing using deep learning.
Lin J; Wong KC
Bioinformatics; 2018 Sep; 34(17):i656-i663. PubMed ID: 30423072
[TBL] [Abstract][Full Text] [Related]
13. A deep learning architecture for metabolic pathway prediction.
Baranwal M; Magner A; Elvati P; Saldinger J; Violi A; Hero AO
Bioinformatics; 2020 Apr; 36(8):2547-2553. PubMed ID: 31879763
[TBL] [Abstract][Full Text] [Related]
14. GraphBin: refined binning of metagenomic contigs using assembly graphs.
Mallawaarachchi V; Wickramarachchi A; Lin Y
Bioinformatics; 2020 Jun; 36(11):3307-3313. PubMed ID: 32167528
[TBL] [Abstract][Full Text] [Related]
15. SCAPP: an algorithm for improved plasmid assembly in metagenomes.
Pellow D; Zorea A; Probst M; Furman O; Segal A; Mizrahi I; Shamir R
Microbiome; 2021 Jun; 9(1):144. PubMed ID: 34172093
[TBL] [Abstract][Full Text] [Related]
16. Transfer learning for biomedical named entity recognition with neural networks.
Giorgi JM; Bader GD
Bioinformatics; 2018 Dec; 34(23):4087-4094. PubMed ID: 29868832
[TBL] [Abstract][Full Text] [Related]
17. DEEPrior: a deep learning tool for the prioritization of gene fusions.
Lovino M; Ciaburri MS; Urgese G; Di Cataldo S; Ficarra E
Bioinformatics; 2020 May; 36(10):3248-3250. PubMed ID: 32016382
[TBL] [Abstract][Full Text] [Related]
18. Deep-learning method for data association in particle tracking.
Yao Y; Smal I; Grigoriev I; Akhmanova A; Meijering E
Bioinformatics; 2020 Dec; 36(19):4935-4941. PubMed ID: 32879934
[TBL] [Abstract][Full Text] [Related]
19. Parapred: antibody paratope prediction using convolutional and recurrent neural networks.
Liberis E; Velickovic P; Sormanni P; Vendruscolo M; Liò P
Bioinformatics; 2018 Sep; 34(17):2944-2950. PubMed ID: 29672675
[TBL] [Abstract][Full Text] [Related]
20. Struo: a pipeline for building custom databases for common metagenome profilers.
de la Cuesta-Zuluaga J; Ley RE; Youngblut ND
Bioinformatics; 2020 Apr; 36(7):2314-2315. PubMed ID: 31778148
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
