142 related articles for article (PubMed ID: 32096820)
1. Tally-2.0: upgraded validator of tandem repeat detection in protein sequences.
Perovic V; Leclercq JY; Sumonja N; Richard FD; Veljkovic N; Kajava AV
Bioinformatics; 2020 May; 36(10):3260-3262. PubMed ID: 32096820
[TBL] [Abstract][Full Text] [Related]
2. Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.
Richard FD; Alves R; Kajava AV
Bioinformatics; 2016 Jul; 32(13):1952-8. PubMed ID: 27153701
[TBL] [Abstract][Full Text] [Related]
3. In search of the boundary between repetitive and non-repetitive protein sequences.
Richard FD; Kajava AV
Biochem Soc Trans; 2015 Oct; 43(5):807-11. PubMed ID: 26517886
[TBL] [Abstract][Full Text] [Related]
4. TRDistiller: a rapid filter for enrichment of sequence datasets with proteins containing tandem repeats.
Richard FD; Kajava AV
J Struct Biol; 2014 Jun; 186(3):386-91. PubMed ID: 24681324
[TBL] [Abstract][Full Text] [Related]
5. Dot2dot: accurate whole-genome tandem repeats discovery.
Genovese LM; Mosca MM; Pellegrini M; Geraci F
Bioinformatics; 2019 Mar; 35(6):914-922. PubMed ID: 30165507
[TBL] [Abstract][Full Text] [Related]
6. T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm.
Jorda J; Kajava AV
Bioinformatics; 2009 Oct; 25(20):2632-8. PubMed ID: 19671691
[TBL] [Abstract][Full Text] [Related]
7. ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions.
Dolzhenko E; Deshpande V; Schlesinger F; Krusche P; Petrovski R; Chen S; Emig-Agius D; Gross A; Narzisi G; Bowman B; Scheffler K; van Vugt JJFA; French C; Sanchis-Juan A; Ibáñez K; Tucci A; Lajoie BR; Veldink JH; Raymond FL; Taft RJ; Bentley DR; Eberle MA
Bioinformatics; 2019 Nov; 35(22):4754-4756. PubMed ID: 31134279
[TBL] [Abstract][Full Text] [Related]
8. Deep conservation of human protein tandem repeats within the eukaryotes.
Schaper E; Gascuel O; Anisimova M
Mol Biol Evol; 2014 May; 31(5):1132-48. PubMed ID: 24497029
[TBL] [Abstract][Full Text] [Related]
9. TRStalker: an efficient heuristic for finding fuzzy tandem repeats.
Pellegrini M; Renda ME; Vecchio A
Bioinformatics; 2010 Jun; 26(12):i358-66. PubMed ID: 20529928
[TBL] [Abstract][Full Text] [Related]
10. Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.
Krejci A; Hupp TR; Lexa M; Vojtesek B; Muller P
Bioinformatics; 2016 Jan; 32(1):9-16. PubMed ID: 26342231
[TBL] [Abstract][Full Text] [Related]
11. Seq2Feature: a comprehensive web-based feature extraction tool.
Nikam R; Gromiha MM
Bioinformatics; 2019 Nov; 35(22):4797-4799. PubMed ID: 31135038
[TBL] [Abstract][Full Text] [Related]
12. Decomposing mosaic tandem repeats accurately from long reads.
Masutani B; Kawahara R; Morishita S
Bioinformatics; 2023 Apr; 39(4):. PubMed ID: 37039842
[TBL] [Abstract][Full Text] [Related]
13. REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.
Kamel M; Kastano K; Mier P; Andrade-Navarro MA
J Mol Biol; 2021 May; 433(11):166895. PubMed ID: 33972020
[TBL] [Abstract][Full Text] [Related]
14. TRTools: a toolkit for genome-wide analysis of tandem repeats.
Mousavi N; Margoliash J; Pusarla N; Saini S; Yanicky R; Gymrek M
Bioinformatics; 2021 May; 37(5):731-733. PubMed ID: 32805020
[TBL] [Abstract][Full Text] [Related]
15. DeepSymmetry: using 3D convolutional networks for identification of tandem repeats and internal symmetries in protein structures.
Pagès G; Grudinin S
Bioinformatics; 2019 Dec; 35(24):5113-5120. PubMed ID: 31161198
[TBL] [Abstract][Full Text] [Related]
16. PRDB: Protein Repeat DataBase.
Jorda J; Baudrand T; Kajava AV
Proteomics; 2012 May; 12(9):1333-6. PubMed ID: 22589183
[TBL] [Abstract][Full Text] [Related]
17. XSTREAM: a practical algorithm for identification and architecture modeling of tandem repeats in protein sequences.
Newman AM; Cooper JB
BMC Bioinformatics; 2007 Oct; 8():382. PubMed ID: 17931424
[TBL] [Abstract][Full Text] [Related]
18. DeepEfflux: a 2D convolutional neural network model for identifying families of efflux proteins in transporters.
Taju SW; Nguyen TT; Le NQ; Kusuma RMI; Ou YY
Bioinformatics; 2018 Sep; 34(18):3111-3117. PubMed ID: 29668844
[TBL] [Abstract][Full Text] [Related]
19. Search for Highly Divergent Tandem Repeats in Amino Acid Sequences.
Rudenko V; Korotkov E
Int J Mol Sci; 2021 Jul; 22(13):. PubMed ID: 34281150
[TBL] [Abstract][Full Text] [Related]
20. Repeat or not repeat?--Statistical validation of tandem repeat prediction in genomic sequences.
Schaper E; Kajava AV; Hauser A; Anisimova M
Nucleic Acids Res; 2012 Nov; 40(20):10005-17. PubMed ID: 22923522
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]