These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
9. GenomeCRISPR - a database for high-throughput CRISPR/Cas9 screens. Rauscher B; Heigwer F; Breinig M; Winter J; Boutros M Nucleic Acids Res; 2017 Jan; 45(D1):D679-D686. PubMed ID: 27789686 [TBL] [Abstract][Full Text] [Related]
10. CRISPhieRmix: a hierarchical mixture model for CRISPR pooled screens. Daley TP; Lin Z; Lin X; Liu Y; Wong WH; Qi LS Genome Biol; 2018 Oct; 19(1):159. PubMed ID: 30296940 [TBL] [Abstract][Full Text] [Related]
11. Genome-wide recessive genetic screening in mammalian cells with a lentiviral CRISPR-guide RNA library. Koike-Yusa H; Li Y; Tan EP; Velasco-Herrera Mdel C; Yusa K Nat Biotechnol; 2014 Mar; 32(3):267-73. PubMed ID: 24535568 [TBL] [Abstract][Full Text] [Related]
12. Direct-seq: programmed gRNA scaffold for streamlined scRNA-seq in CRISPR screen. Song Q; Ni K; Liu M; Li Y; Wang L; Wang Y; Liu Y; Yu Z; Qi Y; Lu Z; Ma L Genome Biol; 2020 Jun; 21(1):136. PubMed ID: 32513233 [TBL] [Abstract][Full Text] [Related]
14. GiRAFR improves gRNA detection and annotation in single-cell CRISPR screens. Yu Q; Van Minsel P; Galle E; Thienpont B Commun Biol; 2023 Sep; 6(1):975. PubMed ID: 37741886 [TBL] [Abstract][Full Text] [Related]
15. SeqCor: correct the effect of guide RNA sequences in clustered regularly interspaced short palindromic repeats/Cas9 screening by machine learning algorithm. Liu X; Yang Y; Qiu Y; Reyad-Ul-Ferdous M; Ding Q; Wang Y J Genet Genomics; 2020 Nov; 47(11):672-680. PubMed ID: 33451939 [TBL] [Abstract][Full Text] [Related]
16. MAUDE: inferring expression changes in sorting-based CRISPR screens. de Boer CG; Ray JP; Hacohen N; Regev A Genome Biol; 2020 Jun; 21(1):134. PubMed ID: 32493396 [TBL] [Abstract][Full Text] [Related]
17. "Off-Spotter": very fast and exhaustive enumeration of genomic lookalikes for designing CRISPR/Cas guide RNAs. Pliatsika V; Rigoutsos I Biol Direct; 2015 Jan; 10():4. PubMed ID: 25630343 [TBL] [Abstract][Full Text] [Related]