These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

93 related articles for article (PubMed ID: 32133992)

  • 1. Estimating local protein model quality: prospects for molecular replacement.
    Wallner B
    Acta Crystallogr D Struct Biol; 2020 Mar; 76(Pt 3):285-290. PubMed ID: 32133992
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ProQ3D: improved model quality assessments using deep learning.
    Uziela K; Menéndez Hurtado D; Shu N; Wallner B; Elofsson A
    Bioinformatics; 2017 May; 33(10):1578-1580. PubMed ID: 28052925
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Assessing the utility of CASP14 models for molecular replacement.
    Millán C; Keegan RM; Pereira J; Sammito MD; Simpkin AJ; McCoy AJ; Lupas AN; Hartmann MD; Rigden DJ; Read RJ
    Proteins; 2021 Dec; 89(12):1752-1769. PubMed ID: 34387010
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProQ3: Improved model quality assessments using Rosetta energy terms.
    Uziela K; Shu N; Wallner B; Elofsson A
    Sci Rep; 2016 Oct; 6():33509. PubMed ID: 27698390
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improved protein model quality assessments by changing the target function.
    Uziela K; Menéndez Hurtado D; Shu N; Wallner B; Elofsson A
    Proteins; 2018 Jun; 86(6):654-663. PubMed ID: 29524250
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Improved estimates of coordinate error for molecular replacement.
    Oeffner RD; Bunkóczi G; McCoy AJ; Read RJ
    Acta Crystallogr D Biol Crystallogr; 2013 Nov; 69(Pt 11):2209-15. PubMed ID: 24189232
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Local error estimates dramatically improve the utility of homology models for solving crystal structures by molecular replacement.
    Bunkóczi G; Wallner B; Read RJ
    Structure; 2015 Feb; 23(2):397-406. PubMed ID: 25619999
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Factors influencing estimates of coordinate error for molecular replacement.
    Hatti KS; McCoy AJ; Oeffner RD; Sammito MD; Read RJ
    Acta Crystallogr D Struct Biol; 2020 Jan; 76(Pt 1):19-27. PubMed ID: 31909740
    [TBL] [Abstract][Full Text] [Related]  

  • 9. CaspR: a web server for automated molecular replacement using homology modelling.
    Claude JB; Suhre K; Notredame C; Claverie JM; Abergel C
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W606-9. PubMed ID: 15215460
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Prediction of global and local model quality in CASP8 using the ModFOLD server.
    McGuffin LJ
    Proteins; 2009; 77 Suppl 9():185-90. PubMed ID: 19585661
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models.
    Maghrabi AHA; McGuffin LJ
    Nucleic Acids Res; 2017 Jul; 45(W1):W416-W421. PubMed ID: 28460136
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assessment of template-based modeling of protein structure in CASP11.
    Modi V; Xu Q; Adhikari S; Dunbrack RL
    Proteins; 2016 Sep; 84 Suppl 1(Suppl 1):200-20. PubMed ID: 27081927
    [TBL] [Abstract][Full Text] [Related]  

  • 13. I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation.
    Wang Y; Virtanen J; Xue Z; Zhang Y
    Nucleic Acids Res; 2017 Jul; 45(W1):W429-W434. PubMed ID: 28472524
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Methods for estimation of model accuracy in CASP12.
    Elofsson A; Joo K; Keasar C; Lee J; Maghrabi AHA; Manavalan B; McGuffin LJ; Ménendez Hurtado D; Mirabello C; Pilstål R; Sidi T; Uziela K; Wallner B
    Proteins; 2018 Mar; 86 Suppl 1():361-373. PubMed ID: 28975666
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Assessment of global and local model quality in CASP8 using Pcons and ProQ.
    Larsson P; Skwark MJ; Wallner B; Elofsson A
    Proteins; 2009; 77 Suppl 9():167-72. PubMed ID: 19544566
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ElNemo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.
    Suhre K; Sanejouand YH
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W610-4. PubMed ID: 15215461
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Error-estimation-guided rebuilding of de novo models increases the success rate of ab initio phasing.
    Shrestha R; Simoncini D; Zhang KY
    Acta Crystallogr D Biol Crystallogr; 2012 Nov; 68(Pt 11):1522-34. PubMed ID: 23090401
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Accurate template-based modeling in CASP12 using the IntFOLD4-TS, ModFOLD6, and ReFOLD methods.
    McGuffin LJ; Shuid AN; Kempster R; Maghrabi AHA; Nealon JO; Salehe BR; Atkins JD; Roche DB
    Proteins; 2018 Mar; 86 Suppl 1():335-344. PubMed ID: 28748648
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Homology modeling, model and software evaluation: three related resources.
    Rodriguez R; Chinea G; Lopez N; Pons T; Vriend G
    Bioinformatics; 1998; 14(6):523-8. PubMed ID: 9694991
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ProQ2: estimation of model accuracy implemented in Rosetta.
    Uziela K; Wallner B
    Bioinformatics; 2016 May; 32(9):1411-3. PubMed ID: 26733453
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.