140 related articles for article (PubMed ID: 32142899)
1. Impact of Reducing DNA Input on Next-Generation Sequencing Library Complexity and Variant Detection.
McNulty SN; Mann PR; Robinson JA; Duncavage EJ; Pfeifer JD
J Mol Diagn; 2020 May; 22(5):720-727. PubMed ID: 32142899
[TBL] [Abstract][Full Text] [Related]
2. TagDust2: a generic method to extract reads from sequencing data.
Lassmann T
BMC Bioinformatics; 2015 Jan; 16():24. PubMed ID: 25627334
[TBL] [Abstract][Full Text] [Related]
3. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data.
Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J
BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822
[TBL] [Abstract][Full Text] [Related]
4. Fragmentation assessment of FFPE DNA helps in evaluating NGS library complexity and interpretation of NGS results.
Ottestad AL; Emdal EF; Grønberg BH; Halvorsen TO; Dai HY
Exp Mol Pathol; 2022 Jun; 126():104771. PubMed ID: 35427578
[TBL] [Abstract][Full Text] [Related]
5. Performance evaluation of commercial library construction kits for PCR-based targeted sequencing using a unique molecular identifier.
Chung J; Lee KW; Lee C; Shin SH; Kyung S; Jeon HJ; Kim SY; Cho E; Yoo CE; Son DS; Park WY; Park D
BMC Genomics; 2019 Mar; 20(1):216. PubMed ID: 30871467
[TBL] [Abstract][Full Text] [Related]
6. Clinical Next-Generation Sequencing Pipeline Outperforms a Combined Approach Using Sanger Sequencing and Multiplex Ligation-Dependent Probe Amplification in Targeted Gene Panel Analysis.
Schenkel LC; Kerkhof J; Stuart A; Reilly J; Eng B; Woodside C; Levstik A; Howlett CJ; Rupar AC; Knoll JHM; Ainsworth P; Waye JS; Sadikovic B
J Mol Diagn; 2016 Sep; 18(5):657-667. PubMed ID: 27376475
[TBL] [Abstract][Full Text] [Related]
7. Barcode-free next-generation sequencing error validation for ultra-rare variant detection.
Yeom H; Lee Y; Ryu T; Noh J; Lee AC; Lee HB; Kang E; Song SW; Kwon S
Nat Commun; 2019 Feb; 10(1):977. PubMed ID: 30816127
[TBL] [Abstract][Full Text] [Related]
8. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
[TBL] [Abstract][Full Text] [Related]
9. Optimization of enzymatic fragmentation is crucial to maximize genome coverage: a comparison of library preparation methods for Illumina sequencing.
Ribarska T; Bjørnstad PM; Sundaram AYM; Gilfillan GD
BMC Genomics; 2022 Feb; 23(1):92. PubMed ID: 35105301
[TBL] [Abstract][Full Text] [Related]
10. Simple multiplexed PCR-based barcoding of DNA for ultrasensitive mutation detection by next-generation sequencing.
Ståhlberg A; Krzyzanowski PM; Egyud M; Filges S; Stein L; Godfrey TE
Nat Protoc; 2017 Apr; 12(4):664-682. PubMed ID: 28253235
[TBL] [Abstract][Full Text] [Related]
11. Primer ID Validates Template Sampling Depth and Greatly Reduces the Error Rate of Next-Generation Sequencing of HIV-1 Genomic RNA Populations.
Zhou S; Jones C; Mieczkowski P; Swanstrom R
J Virol; 2015 Aug; 89(16):8540-55. PubMed ID: 26041299
[TBL] [Abstract][Full Text] [Related]
12. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
13. Coverage analysis in a targeted amplicon-based next-generation sequencing panel for myeloid neoplasms.
Yan B; Hu Y; Ng C; Ban KH; Tan TW; Huan PT; Lee PL; Chiu L; Seah E; Ng CH; Koay ES; Chng WJ
J Clin Pathol; 2016 Sep; 69(9):801-4. PubMed ID: 26896490
[TBL] [Abstract][Full Text] [Related]
14. Fluorescent amplification for next generation sequencing (FA-NGS) library preparation.
Chiniquy J; Garber ME; Mukhopadhyay A; Hillson NJ
BMC Genomics; 2020 Jan; 21(1):85. PubMed ID: 31992180
[TBL] [Abstract][Full Text] [Related]
15. AmpliVar: mutation detection in high-throughput sequence from amplicon-based libraries.
Hsu AL; Kondrashova O; Lunke S; Love CJ; Meldrum C; Marquis-Nicholson R; Corboy G; Pham K; Wakefield M; Waring PM; Taylor GR
Hum Mutat; 2015 Apr; 36(4):411-8. PubMed ID: 25664426
[TBL] [Abstract][Full Text] [Related]
16. Next-generation sequencing fragment library construction.
Podnar J; Deiderick H; Hunicke-Smith S
Curr Protoc Mol Biol; 2014 Jul; 107():7.17.1-7.17.16. PubMed ID: 24984855
[TBL] [Abstract][Full Text] [Related]
17. Standardization of Sequencing Coverage Depth in NGS: Recommendation for Detection of Clonal and Subclonal Mutations in Cancer Diagnostics.
Petrackova A; Vasinek M; Sedlarikova L; Dyskova T; Schneiderova P; Novosad T; Papajik T; Kriegova E
Front Oncol; 2019; 9():851. PubMed ID: 31552176
[TBL] [Abstract][Full Text] [Related]
18. On the causes, consequences, and avoidance of PCR duplicates: Towards a theory of library complexity.
Rochette NC; Rivera-Colón AG; Walsh J; Sanger TJ; Campbell-Staton SC; Catchen JM
Mol Ecol Resour; 2023 Aug; 23(6):1299-1318. PubMed ID: 37062860
[TBL] [Abstract][Full Text] [Related]
19. Library preparation methods for next-generation sequencing: tone down the bias.
van Dijk EL; Jaszczyszyn Y; Thermes C
Exp Cell Res; 2014 Mar; 322(1):12-20. PubMed ID: 24440557
[TBL] [Abstract][Full Text] [Related]
20. Robust Sub-nanomolar Library Preparation for High Throughput Next Generation Sequencing.
Wu WW; Phue JN; Lee CT; Lin C; Xu L; Wang R; Zhang Y; Shen RF
BMC Genomics; 2018 May; 19(1):326. PubMed ID: 29728062
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
