479 related articles for article (PubMed ID: 32153100)
1. A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.
Colella JP; Tigano A; MacManes MD
Mol Ecol Resour; 2020 Jul; 20(4):856-870. PubMed ID: 32153100
[TBL] [Abstract][Full Text] [Related]
2. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.
Derakhshani H; Bernier SP; Marko VA; Surette MG
BMC Genomics; 2020 Jul; 21(1):519. PubMed ID: 32727443
[TBL] [Abstract][Full Text] [Related]
3. Challenges and advances for transcriptome assembly in non-model species.
Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
[TBL] [Abstract][Full Text] [Related]
4. Rapid Low-Cost Assembly of the
Solares EA; Chakraborty M; Miller DE; Kalsow S; Hall K; Perera AG; Emerson JJ; Hawley RS
G3 (Bethesda); 2018 Oct; 8(10):3143-3154. PubMed ID: 30018084
[TBL] [Abstract][Full Text] [Related]
5. De novo assembly of a chromosome-level reference genome of red-spotted grouper (Epinephelus akaara) using nanopore sequencing and Hi-C.
Ge H; Lin K; Shen M; Wu S; Wang Y; Zhang Z; Wang Z; Zhang Y; Huang Z; Zhou C; Lin Q; Wu J; Liu L; Hu J; Huang Z; Zheng L
Mol Ecol Resour; 2019 Nov; 19(6):1461-1469. PubMed ID: 31325912
[TBL] [Abstract][Full Text] [Related]
6. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.
Chakraborty M; Baldwin-Brown JG; Long AD; Emerson JJ
Nucleic Acids Res; 2016 Nov; 44(19):e147. PubMed ID: 27458204
[TBL] [Abstract][Full Text] [Related]
7. Fast Short Read De-Novo Assembly Using Overlap-Layout-Consensus Approach.
Bayat A; Deshpande NP; Wilkins MR; Parameswaran S
IEEE/ACM Trans Comput Biol Bioinform; 2020; 17(1):334-338. PubMed ID: 30307874
[TBL] [Abstract][Full Text] [Related]
8. Linked read technology for assembling large complex and polyploid genomes.
Ott A; Schnable JC; Yeh CT; Wu L; Liu C; Hu HC; Dalgard CL; Sarkar S; Schnable PS
BMC Genomics; 2018 Sep; 19(1):651. PubMed ID: 30180802
[TBL] [Abstract][Full Text] [Related]
9. Assessment of human diploid genome assembly with 10x Linked-Reads data.
Zhang L; Zhou X; Weng Z; Sidow A
Gigascience; 2019 Nov; 8(11):. PubMed ID: 31769805
[TBL] [Abstract][Full Text] [Related]
10. Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.
Umemura M; Koyama Y; Takeda I; Hagiwara H; Ikegami T; Koike H; Machida M
PLoS One; 2013; 8(5):e63673. PubMed ID: 23667655
[TBL] [Abstract][Full Text] [Related]
11. Twelve quick steps for genome assembly and annotation in the classroom.
Jung H; Ventura T; Chung JS; Kim WJ; Nam BH; Kong HJ; Kim YO; Jeon MS; Eyun SI
PLoS Comput Biol; 2020 Nov; 16(11):e1008325. PubMed ID: 33180771
[TBL] [Abstract][Full Text] [Related]
12. A high-quality de novo genome assembly based on nanopore sequencing of a wild-caught coconut rhinoceros beetle (Oryctes rhinoceros).
Filipović I; Rašić G; Hereward J; Gharuka M; Devine GJ; Furlong MJ; Etebari K
BMC Genomics; 2022 Jun; 23(1):426. PubMed ID: 35672676
[TBL] [Abstract][Full Text] [Related]
13. A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.
Bratcher HB; Corton C; Jolley KA; Parkhill J; Maiden MC
BMC Genomics; 2014 Dec; 15(1):1138. PubMed ID: 25523208
[TBL] [Abstract][Full Text] [Related]
14. In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.
Adey A; Kitzman JO; Burton JN; Daza R; Kumar A; Christiansen L; Ronaghi M; Amini S; Gunderson KL; Steemers FJ; Shendure J
Genome Res; 2014 Dec; 24(12):2041-9. PubMed ID: 25327137
[TBL] [Abstract][Full Text] [Related]
15. Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal.
Etherington GJ; Heavens D; Baker D; Lister A; McNelly R; Garcia G; Clavijo B; Macaulay I; Haerty W; Di Palma F
Gigascience; 2020 May; 9(5):. PubMed ID: 32396200
[TBL] [Abstract][Full Text] [Related]
16. Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information.
Chen Z; Pham L; Wu TC; Mo G; Xia Y; Chang PL; Porter D; Phan T; Che H; Tran H; Bansal V; Shaffer J; Belda-Ferre P; Humphrey G; Knight R; Pevzner P; Pham S; Wang Y; Lei M
Genome Res; 2020 Jun; 30(6):898-909. PubMed ID: 32540955
[TBL] [Abstract][Full Text] [Related]
17. ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers.
Coombe L; Zhang J; Vandervalk BP; Chu J; Jackman SD; Birol I; Warren RL
BMC Bioinformatics; 2018 Jun; 19(1):234. PubMed ID: 29925315
[TBL] [Abstract][Full Text] [Related]
18. Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish.
Johnson LK; Sahasrabudhe R; Gill JA; Roach JL; Froenicke L; Brown CT; Whitehead A
Gigascience; 2020 Jun; 9(6):. PubMed ID: 32556169
[TBL] [Abstract][Full Text] [Related]
19. A hybrid approach for de novo human genome sequence assembly and phasing.
Mostovoy Y; Levy-Sakin M; Lam J; Lam ET; Hastie AR; Marks P; Lee J; Chu C; Lin C; Džakula Ž; Cao H; Schlebusch SA; Giorda K; Schnall-Levin M; Wall JD; Kwok PY
Nat Methods; 2016 Jul; 13(7):587-90. PubMed ID: 27159086
[TBL] [Abstract][Full Text] [Related]
20. The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome.
Sakai H; Naito K; Ogiso-Tanaka E; Takahashi Y; Iseki K; Muto C; Satou K; Teruya K; Shiroma A; Shimoji M; Hirano T; Itoh T; Kaga A; Tomooka N
Sci Rep; 2015 Nov; 5():16780. PubMed ID: 26616024
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
