148 related articles for article (PubMed ID: 32160034)
1. Designing RNA Secondary Structures Is Hard.
Bonnet É; Rzążewski P; Sikora F
J Comput Biol; 2020 Mar; 27(3):302-316. PubMed ID: 32160034
[No Abstract] [Full Text] [Related]
2. Predicting RNA secondary structures with arbitrary pseudoknots by maximizing the number of stacking pairs.
Ieong S; Kao MY; Lam TW; Sung WK; Yiu SM
J Comput Biol; 2003; 10(6):981-95. PubMed ID: 14980021
[TBL] [Abstract][Full Text] [Related]
3. Frnakenstein: multiple target inverse RNA folding.
Lyngsø RB; Anderson JW; Sizikova E; Badugu A; Hyland T; Hein J
BMC Bioinformatics; 2012 Oct; 13():260. PubMed ID: 23043260
[TBL] [Abstract][Full Text] [Related]
4. RNA pseudoknot prediction in energy-based models.
Lyngsø RB; Pedersen CN
J Comput Biol; 2000; 7(3-4):409-27. PubMed ID: 11108471
[TBL] [Abstract][Full Text] [Related]
5. Approximation algorithms for predicting RNA secondary structures with arbitrary pseudoknots.
Jiang M
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(2):323-32. PubMed ID: 20431151
[TBL] [Abstract][Full Text] [Related]
6. K-partite RNA secondary structures.
Jiang M; Tejada PJ; Lasisi RO; Cheng S; Fechser DS
J Comput Biol; 2010 Jul; 17(7):915-25. PubMed ID: 20632871
[TBL] [Abstract][Full Text] [Related]
7. Asymptotic number of hairpins of saturated RNA secondary structures.
Clote P; Kranakis E; Krizanc D
Bull Math Biol; 2013 Dec; 75(12):2410-30. PubMed ID: 24142625
[TBL] [Abstract][Full Text] [Related]
8. Prediction of RNA secondary structure with pseudoknots using integer programming.
Poolsap U; Kato Y; Akutsu T
BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S38. PubMed ID: 19208139
[TBL] [Abstract][Full Text] [Related]
9. Thermodynamic heuristics with case-based reasoning: combined insights for RNA pseudoknot secondary structure.
Al-Khatib RM; Rashid NA; Abdullah R
J Biomol Struct Dyn; 2011 Aug; 29(1):1-26. PubMed ID: 21696223
[TBL] [Abstract][Full Text] [Related]
10. RNAknot: A new algorithm for RNA secondary structure prediction based on genetic algorithm and GRASP method.
El Fatmi A; Bekri MA; Benhlima S
J Bioinform Comput Biol; 2019 Oct; 17(5):1950031. PubMed ID: 31856666
[TBL] [Abstract][Full Text] [Related]
11. Identifying complete RNA structural ensembles including pseudoknots.
Gupta A; Rahman R; Li K; Gribskov M
RNA Biol; 2012 Feb; 9(2):187-99. PubMed ID: 22418849
[TBL] [Abstract][Full Text] [Related]
12. Natural selection and algorithmic design of mRNA.
Cohen B; Skiena S
J Comput Biol; 2003; 10(3-4):419-32. PubMed ID: 12935336
[TBL] [Abstract][Full Text] [Related]
13. PSRna: Prediction of small RNA secondary structures based on reverse complementary folding method.
Li J; Xu C; Wang L; Liang H; Feng W; Cai Z; Wang Y; Cong W; Liu Y
J Bioinform Comput Biol; 2016 Aug; 14(4):1643001. PubMed ID: 27045556
[TBL] [Abstract][Full Text] [Related]
14. FlexStem: improving predictions of RNA secondary structures with pseudoknots by reducing the search space.
Chen X; He SM; Bu D; Zhang F; Wang Z; Chen R; Gao W
Bioinformatics; 2008 Sep; 24(18):1994-2001. PubMed ID: 18586700
[TBL] [Abstract][Full Text] [Related]
15. Thermodynamics of RNA structures by Wang-Landau sampling.
Lou F; Clote P
Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917
[TBL] [Abstract][Full Text] [Related]
16. Predicting pseudoknotted structures across two RNA sequences.
Sperschneider J; Datta A; Wise MJ
Bioinformatics; 2012 Dec; 28(23):3058-65. PubMed ID: 23044552
[TBL] [Abstract][Full Text] [Related]
17. Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots.
Thanh VH; Korpela D; Orponen P
J Comput Biol; 2021 Sep; 28(9):892-908. PubMed ID: 33902324
[No Abstract] [Full Text] [Related]
18. [Predicting RNA secondary structures including pseudoknots by covariance with stacking and minimum free energy].
Yang J; Luo Z; Fang X; Wang J; Tang K
Sheng Wu Gong Cheng Xue Bao; 2008 Apr; 24(4):659-64. PubMed ID: 18616179
[TBL] [Abstract][Full Text] [Related]
19. RNAiFOLD: a constraint programming algorithm for RNA inverse folding and molecular design.
Garcia-Martin JA; Clote P; Dotu I
J Bioinform Comput Biol; 2013 Apr; 11(2):1350001. PubMed ID: 23600819
[TBL] [Abstract][Full Text] [Related]
20. ERD: a fast and reliable tool for RNA design including constraints.
Esmaili-Taheri A; Ganjtabesh M
BMC Bioinformatics; 2015 Jan; 16():20. PubMed ID: 25626878
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
