146 related articles for article (PubMed ID: 32160034)
21. Novel and efficient RNA secondary structure prediction using hierarchical folding.
Jabbari H; Condon A; Zhao S
J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
[TBL] [Abstract][Full Text] [Related]
22. An Efficient Dual Sampling Algorithm with Hamming Distance Filtration.
Barrett C; He Q; Huang FW; Reidys CM
J Comput Biol; 2018 Nov; 25(11):1179-1192. PubMed ID: 30133328
[TBL] [Abstract][Full Text] [Related]
23. RiboDiffusion: tertiary structure-based RNA inverse folding with generative diffusion models.
Huang H; Lin Z; He D; Hong L; Li Y
Bioinformatics; 2024 Jun; 40(Supplement_1):i347-i356. PubMed ID: 38940178
[TBL] [Abstract][Full Text] [Related]
24. Inverse RNA Folding Workflow to Design and Test Ribozymes that Include Pseudoknots.
Kayedkhordeh M; Yamagami R; Bevilacqua PC; Mathews DH
Methods Mol Biol; 2021; 2167():113-143. PubMed ID: 32712918
[TBL] [Abstract][Full Text] [Related]
25. Accelerated RNA secondary structure design using preselected sequences for helices and loops.
Bellaousov S; Kayedkhordeh M; Peterson RJ; Mathews DH
RNA; 2018 Nov; 24(11):1555-1567. PubMed ID: 30097542
[TBL] [Abstract][Full Text] [Related]
26. A new algorithm for RNA secondary structure design.
Andronescu M; Fejes AP; Hutter F; Hoos HH; Condon A
J Mol Biol; 2004 Feb; 336(3):607-24. PubMed ID: 15095976
[TBL] [Abstract][Full Text] [Related]
27. Extended shapes for the combinatorial design of RNA sequences.
Hellmuth M; Merkle D; Middendorf M
Int J Comput Biol Drug Des; 2009; 2(4):371-84. PubMed ID: 20090177
[TBL] [Abstract][Full Text] [Related]
28. Maximum Stacking Base Pairs: Hardness and Approximation by Nonlinear Linear Programming-Rounding.
Liu L; Jiang H; Liu P; Zhu B; Zhu D
J Comput Biol; 2020 Feb; 27(2):200-211. PubMed ID: 31905005
[No Abstract] [Full Text] [Related]
29. Design of RNAs: comparing programs for inverse RNA folding.
Churkin A; Retwitzer MD; Reinharz V; Ponty Y; Waldispühl J; Barash D
Brief Bioinform; 2018 Mar; 19(2):350-358. PubMed ID: 28049135
[TBL] [Abstract][Full Text] [Related]
30. Free energy minimization to predict RNA secondary structures and computational RNA design.
Churkin A; Weinbrand L; Barash D
Methods Mol Biol; 2015; 1269():3-16. PubMed ID: 25577369
[TBL] [Abstract][Full Text] [Related]
31. An algorithm for the energy barrier problem without pseudoknots and temporary arcs.
Thachuk C; Manuch J; Rafiey A; Mathieson LA; Stacho L; Condon A
Pac Symp Biocomput; 2010; ():108-19. PubMed ID: 19908363
[TBL] [Abstract][Full Text] [Related]
32. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
33. Network Properties of the Ensemble of RNA Structures.
Clote P; Bayegan A
PLoS One; 2015; 10(10):e0139476. PubMed ID: 26488894
[TBL] [Abstract][Full Text] [Related]
34. Computing the partition function and sampling for saturated secondary structures of RNA, with respect to the Turner energy model.
Waldispühl J; Clote P
J Comput Biol; 2007 Mar; 14(2):190-215. PubMed ID: 17456015
[TBL] [Abstract][Full Text] [Related]
35. Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes.
Najeh S; Zandi K; Djerroud S; Kharma N; Perreault J
Methods Mol Biol; 2021; 2167():91-111. PubMed ID: 32712917
[TBL] [Abstract][Full Text] [Related]
36. RNAdualPF: software to compute the dual partition function with sample applications in molecular evolution theory.
Garcia-Martin JA; Bayegan AH; Dotu I; Clote P
BMC Bioinformatics; 2016 Oct; 17(1):424. PubMed ID: 27756204
[TBL] [Abstract][Full Text] [Related]
37. Principles for Predicting RNA Secondary Structure Design Difficulty.
Anderson-Lee J; Fisker E; Kosaraju V; Wu M; Kong J; Lee J; Lee M; Zada M; Treuille A; Das R;
J Mol Biol; 2016 Feb; 428(5 Pt A):748-757. PubMed ID: 26902426
[TBL] [Abstract][Full Text] [Related]
38. RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots.
Shabash B; Wiese KC
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(3):696-712. PubMed ID: 26915129
[TBL] [Abstract][Full Text] [Related]
39. RNA folding on the 3D triangular lattice.
Gillespie J; Mayne M; Jiang M
BMC Bioinformatics; 2009 Nov; 10():369. PubMed ID: 19891777
[TBL] [Abstract][Full Text] [Related]
40. Recent advances in RNA folding.
Fallmann J; Will S; Engelhardt J; Grüning B; Backofen R; Stadler PF
J Biotechnol; 2017 Nov; 261():97-104. PubMed ID: 28690134
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
