247 related articles for article (PubMed ID: 32160708)
1. Pan-Cancer Analysis Reveals the Diverse Landscape of Novel Sense and Antisense Fusion Transcripts.
Vellichirammal NN; Albahrani A; Banwait JK; Mishra NK; Li Y; Roychoudhury S; Kling MJ; Mirza S; Bhakat KK; Band V; Joshi SS; Guda C
Mol Ther Nucleic Acids; 2020 Mar; 19():1379-1398. PubMed ID: 32160708
[TBL] [Abstract][Full Text] [Related]
2. Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.
Ha KC; Lalonde E; Li L; Cavallone L; Natrajan R; Lambros MB; Mitsopoulos C; Hakas J; Kozarewa I; Fenwick K; Lord CJ; Ashworth A; Vincent-Salomon A; Basik M; Reis-Filho JS; Majewski J; Foulkes WD
BMC Med Genomics; 2011 Oct; 4():75. PubMed ID: 22032724
[TBL] [Abstract][Full Text] [Related]
3. INTEGRATE: gene fusion discovery using whole genome and transcriptome data.
Zhang J; White NM; Schmidt HK; Fulton RS; Tomlinson C; Warren WC; Wilson RK; Maher CA
Genome Res; 2016 Jan; 26(1):108-18. PubMed ID: 26556708
[TBL] [Abstract][Full Text] [Related]
4. Improved detection of clinically relevant fusion transcripts in cancer by machine learning classification.
Hafstað V; Häkkinen J; Larsson M; Staaf J; Vallon-Christersson J; Persson H
BMC Genomics; 2023 Dec; 24(1):783. PubMed ID: 38110872
[TBL] [Abstract][Full Text] [Related]
5. The landscape and therapeutic relevance of cancer-associated transcript fusions.
Yoshihara K; Wang Q; Torres-Garcia W; Zheng S; Vegesna R; Kim H; Verhaak RG
Oncogene; 2015 Sep; 34(37):4845-54. PubMed ID: 25500544
[TBL] [Abstract][Full Text] [Related]
6. Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data.
Shah N; Lankerovich M; Lee H; Yoon JG; Schroeder B; Foltz G
BMC Genomics; 2013 Nov; 14(1):818. PubMed ID: 24261984
[TBL] [Abstract][Full Text] [Related]
7. Fusion gene recurrence in non-small cell lung cancers and its association with cigarette smoke exposure.
Vellichirammal NN; Albahrani A; Guda C
Transl Lung Cancer Res; 2022 Oct; 11(10):2022-2039. PubMed ID: 36386463
[TBL] [Abstract][Full Text] [Related]
8. ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data.
Li Y; Heavican TB; Vellichirammal NN; Iqbal J; Guda C
Nucleic Acids Res; 2017 Jul; 45(13):e120. PubMed ID: 28472320
[TBL] [Abstract][Full Text] [Related]
9. Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypes.
Earp MA; Raghavan R; Li Q; Dai J; Winham SJ; Cunningham JM; Natanzon Y; Kalli KR; Hou X; Weroha SJ; Haluska P; Lawrenson K; Gayther SA; Wang C; Goode EL; Fridley BL
Oncotarget; 2017 Jul; 8(29):46891-46899. PubMed ID: 28423358
[TBL] [Abstract][Full Text] [Related]
10. Pan-cancer analysis reveals multifaceted roles of retrotransposon-fusion RNAs.
Lee B; Park J; Voshall A; Maury E; Kang Y; Kim YJ; Lee JY; Shim HR; Kim HJ; Lee JW; Jung MH; Kim SC; Chu HBK; Kim DW; Kim M; Choi EJ; Hwang OK; Lee HW; Ha K; Choi JK; Kim Y; Choi Y; Park WY; Lee EA
bioRxiv; 2023 Oct; ():. PubMed ID: 37905014
[TBL] [Abstract][Full Text] [Related]
11. Identification of Fusion Transcripts from Unaligned RNA-Seq Reads Using ChimeRScope.
Vellichirammal NN; Albahrani A; Li Y; Guda C
Methods Mol Biol; 2020; 2079():13-25. PubMed ID: 31728959
[TBL] [Abstract][Full Text] [Related]
12. Systematic discovery of gene fusions in pediatric cancer by integrating RNA-seq and WGS.
van Belzen IAEM; Cai C; van Tuil M; Badloe S; Strengman E; Janse A; Verwiel ETP; van der Leest DFM; Kester L; Molenaar JJ; Meijerink J; Drost J; Peng WC; Kerstens HHD; Tops BBJ; Holstege FCP; Kemmeren P; Hehir-Kwa JY
BMC Cancer; 2023 Jul; 23(1):618. PubMed ID: 37400763
[TBL] [Abstract][Full Text] [Related]
13. Fast and sensitive validation of fusion transcripts in whole-genome sequencing data.
Hafstað V; Häkkinen J; Persson H
BMC Bioinformatics; 2023 Sep; 24(1):359. PubMed ID: 37741966
[TBL] [Abstract][Full Text] [Related]
14. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
Zhang Y; Chen F; Creighton CJ
BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
[TBL] [Abstract][Full Text] [Related]
15. Recurrent fusion transcripts detected by whole-transcriptome sequencing of 120 primary breast cancer samples.
Kim J; Kim S; Ko S; In YH; Moon HG; Ahn SK; Kim MK; Lee M; Hwang JH; Ju YS; Kim JI; Noh DY; Kim S; Park JH; Rhee H; Kim S; Han W
Genes Chromosomes Cancer; 2015 Nov; 54(11):681-91. PubMed ID: 26227178
[TBL] [Abstract][Full Text] [Related]
16. NRG1 fusions in breast cancer.
Howarth KD; Mirza T; Cooke SL; Chin SF; Pole JC; Turro E; Eldridge MD; Garcia RM; Rueda OM; Boursnell C; Abraham JE; Caldas C; Edwards PAW
Breast Cancer Res; 2021 Jan; 23(1):3. PubMed ID: 33413557
[TBL] [Abstract][Full Text] [Related]
17. The landscape of chimeric RNAs in bladder urothelial carcinoma.
Zhu D; Singh S; Chen X; Zheng Z; Huang J; Lin T; Li H
Int J Biochem Cell Biol; 2019 May; 110():50-58. PubMed ID: 30818082
[TBL] [Abstract][Full Text] [Related]
18. Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer.
Lee S; Hu Y; Loo SK; Tan Y; Bhargava R; Lewis MT; Wang XS
Proc Natl Acad Sci U S A; 2020 May; 117(18):9912-9921. PubMed ID: 32321829
[TBL] [Abstract][Full Text] [Related]
19. Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer.
Kalyana-Sundaram S; Shankar S; Deroo S; Iyer MK; Palanisamy N; Chinnaiyan AM; Kumar-Sinha C
Neoplasia; 2012 Aug; 14(8):702-8. PubMed ID: 22952423
[TBL] [Abstract][Full Text] [Related]
20. Identification of novel fusion transcripts in multiple myeloma.
Lin M; Lee PL; Chiu L; Chua C; Ban KHK; Lin AHF; Chan ZL; Chung TH; Yan B; Chng WJ
J Clin Pathol; 2018 Aug; 71(8):708-712. PubMed ID: 29453220
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
