388 related articles for article (PubMed ID: 32171248)
1. Joining Illumina paired-end reads for classifying phylogenetic marker sequences.
Liu T; Chen CY; Chen-Deng A; Chen YL; Wang JY; Hou YI; Lin MC
BMC Bioinformatics; 2020 Mar; 21(1):105. PubMed ID: 32171248
[TBL] [Abstract][Full Text] [Related]
2. A comprehensive investigation of metagenome assembly by linked-read sequencing.
Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
[TBL] [Abstract][Full Text] [Related]
3. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.
Treiber ML; Taft DH; Korf I; Mills DA; Lemay DG
BMC Bioinformatics; 2020 Feb; 21(1):74. PubMed ID: 32093654
[TBL] [Abstract][Full Text] [Related]
4. Accurate taxonomic assignment of short pyrosequencing reads.
Clemente JC; Jansson J; Valiente G
Pac Symp Biocomput; 2010; ():3-9. PubMed ID: 19908352
[TBL] [Abstract][Full Text] [Related]
5. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
6. CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities.
Kondratenko Y; Korobeynikov A; Lapidus A
BMC Bioinformatics; 2020 Jul; 21(Suppl 12):303. PubMed ID: 32703166
[TBL] [Abstract][Full Text] [Related]
7. NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors.
Gaspar JM
BMC Bioinformatics; 2018 Dec; 19(1):536. PubMed ID: 30572828
[TBL] [Abstract][Full Text] [Related]
8. Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities.
Dacey DP; Chain FJJ
BMC Bioinformatics; 2021 Oct; 22(1):493. PubMed ID: 34641782
[TBL] [Abstract][Full Text] [Related]
9. Exploiting topic modeling to boost metagenomic reads binning.
Zhang R; Cheng Z; Guan J; Zhou S
BMC Bioinformatics; 2015; 16 Suppl 5(Suppl 5):S2. PubMed ID: 25859745
[TBL] [Abstract][Full Text] [Related]
10. Re-purposing software for functional characterization of the microbiome.
Gardiner LJ; Haiminen N; Utro F; Parida L; Seabolt E; Krishna R; Kaufman JH
Microbiome; 2021 Jan; 9(1):4. PubMed ID: 33422152
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
12. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
Du N; Chen J; Sun Y
BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
[TBL] [Abstract][Full Text] [Related]
13. Hybrid-denovo: a de novo OTU-picking pipeline integrating single-end and paired-end 16S sequence tags.
Chen X; Johnson S; Jeraldo P; Wang J; Chia N; Kocher JA; Chen J
Gigascience; 2018 Mar; 7(3):1-7. PubMed ID: 29267858
[TBL] [Abstract][Full Text] [Related]
14. Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples.
Buetas E; Jordán-López M; López-Roldán A; D'Auria G; Martínez-Priego L; De Marco G; Carda-Diéguez M; Mira A
BMC Genomics; 2024 Mar; 25(1):310. PubMed ID: 38528457
[TBL] [Abstract][Full Text] [Related]
15. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
[TBL] [Abstract][Full Text] [Related]
16. Impact of quality trimming on the efficiency of reads joining and diversity analysis of Illumina paired-end reads in the context of QIIME1 and QIIME2 microbiome analysis frameworks.
Mohsen A; Park J; Chen YA; Kawashima H; Mizuguchi K
BMC Bioinformatics; 2019 Nov; 20(1):581. PubMed ID: 31730472
[TBL] [Abstract][Full Text] [Related]
17. Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data.
Schirmer M; D'Amore R; Ijaz UZ; Hall N; Quince C
BMC Bioinformatics; 2016 Mar; 17():125. PubMed ID: 26968756
[TBL] [Abstract][Full Text] [Related]
18. Benefits of merging paired-end reads before pre-processing environmental metagenomics data.
Maran MIJ; Davis G DJ
Mar Genomics; 2022 Feb; 61():100914. PubMed ID: 34864203
[TBL] [Abstract][Full Text] [Related]
19. Short clones or long clones? A simulation study on the use of paired reads in metagenomics.
Mitra S; Schubach M; Huson DH
BMC Bioinformatics; 2010 Jan; 11 Suppl 1(Suppl 1):S12. PubMed ID: 20122183
[TBL] [Abstract][Full Text] [Related]
20. An extended single-index multiplexed 16S rRNA sequencing for microbial community analysis on MiSeq illumina platforms.
Derakhshani H; Tun HM; Khafipour E
J Basic Microbiol; 2016 Mar; 56(3):321-6. PubMed ID: 26426811
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]