144 related articles for article (PubMed ID: 32183735)
1. SEQing: web-based visualization of iCLIP and RNA-seq data in an interactive python framework.
Lewinski M; Bramkamp Y; Köster T; Staiger D
BMC Bioinformatics; 2020 Mar; 21(1):113. PubMed ID: 32183735
[TBL] [Abstract][Full Text] [Related]
2. PureCLIP: capturing target-specific protein-RNA interaction footprints from single-nucleotide CLIP-seq data.
Krakau S; Richard H; Marsico A
Genome Biol; 2017 Dec; 18(1):240. PubMed ID: 29284540
[TBL] [Abstract][Full Text] [Related]
3. Insights into the design and interpretation of iCLIP experiments.
Haberman N; Huppertz I; Attig J; König J; Wang Z; Hauer C; Hentze MW; Kulozik AE; Le Hir H; Curk T; Sibley CR; Zarnack K; Ule J
Genome Biol; 2017 Jan; 18(1):7. PubMed ID: 28093074
[TBL] [Abstract][Full Text] [Related]
4. omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data.
Drewe-Boss P; Wessels HH; Ohler U
Genome Biol; 2018 Nov; 19(1):183. PubMed ID: 30384847
[TBL] [Abstract][Full Text] [Related]
5. Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP.
Hauer C; Curk T; Anders S; Schwarzl T; Alleaume AM; Sieber J; Hollerer I; Bhuvanagiri M; Huber W; Hentze MW; Kulozik AE
Nat Commun; 2015 Aug; 6():7921. PubMed ID: 26260686
[TBL] [Abstract][Full Text] [Related]
6. Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7.
Meyer K; Köster T; Nolte C; Weinholdt C; Lewinski M; Grosse I; Staiger D
Genome Biol; 2017 Oct; 18(1):204. PubMed ID: 29084609
[TBL] [Abstract][Full Text] [Related]
7. Genome-Wide Profiling of RNA-Protein Interactions Using CLIP-Seq.
Stork C; Zheng S
Methods Mol Biol; 2016; 1421():137-51. PubMed ID: 26965263
[TBL] [Abstract][Full Text] [Related]
8. iCLIP: protein-RNA interactions at nucleotide resolution.
Huppertz I; Attig J; D'Ambrogio A; Easton LE; Sibley CR; Sugimoto Y; Tajnik M; König J; Ule J
Methods; 2014 Feb; 65(3):274-87. PubMed ID: 24184352
[TBL] [Abstract][Full Text] [Related]
9. htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets.
Sahadevan S; Sekaran T; Ashaf N; Fritz M; Hentze MW; Huber W; Schwarzl T
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36394253
[TBL] [Abstract][Full Text] [Related]
10. iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites.
Busch A; Brüggemann M; Ebersberger S; Zarnack K
Methods; 2020 Jun; 178():49-62. PubMed ID: 31751605
[TBL] [Abstract][Full Text] [Related]
11. Revised iCLIP-seq Protocol for Profiling RNA-protein Interaction Sites at Individual Nucleotide Resolution in Living Cells.
Nabeel-Shah S; Greenblatt JF
Bio Protoc; 2023 Jun; 13(11):e4688. PubMed ID: 37323634
[TBL] [Abstract][Full Text] [Related]
12. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
13. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
14. Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP.
Sutandy FX; Hildebrandt A; König J
Methods Mol Biol; 2016; 1358():175-95. PubMed ID: 26463384
[TBL] [Abstract][Full Text] [Related]
15. A Pipeline for Analyzing eCLIP and iCLIP Data with Htseq-clip and DEWSeq.
Sahadevan S; Sekaran T; Schwarzl T
Methods Mol Biol; 2022; 2404():189-205. PubMed ID: 34694610
[TBL] [Abstract][Full Text] [Related]
16. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
17. Global protein-RNA interaction mapping at single nucleotide resolution by iCLIP-seq.
Yao C; Weng L; Shi Y
Methods Mol Biol; 2014; 1126():399-410. PubMed ID: 24549678
[TBL] [Abstract][Full Text] [Related]
18. Systematic identification of NF90 target RNAs by iCLIP analysis.
Lodde V; Floris M; Munk R; Martindale JL; Piredda D; Napodano CMP; Cucca F; Uzzau S; Abdelmohsen K; Gorospe M; Noh JH; Idda ML
Sci Rep; 2022 Jan; 12(1):364. PubMed ID: 35013429
[TBL] [Abstract][Full Text] [Related]
19. Individual Nucleotide Resolution UV Cross-Linking and Immunoprecipitation (iCLIP) to Determine Protein-RNA Interactions.
Sibley CR
Methods Mol Biol; 2018; 1649():427-454. PubMed ID: 29130215
[TBL] [Abstract][Full Text] [Related]
20. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA.
Patton RD; Sanjeev M; Woodward LA; Mabin JW; Bundschuh R; Singh G
RNA; 2020 Sep; 26(9):1216-1233. PubMed ID: 32467309
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
