144 related articles for article (PubMed ID: 32183735)
21. Chemical crosslinking enhances RNA immunoprecipitation for efficient identification of binding sites of proteins that photo-crosslink poorly with RNA.
Patton RD; Sanjeev M; Woodward LA; Mabin JW; Bundschuh R; Singh G
RNA; 2020 Sep; 26(9):1216-1233. PubMed ID: 32467309
[TBL] [Abstract][Full Text] [Related]
22. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
23. rMAPS: RNA map analysis and plotting server for alternative exon regulation.
Park JW; Jung S; Rouchka EC; Tseng YT; Xing Y
Nucleic Acids Res; 2016 Jul; 44(W1):W333-8. PubMed ID: 27174931
[TBL] [Abstract][Full Text] [Related]
24. PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis.
Chen B; Yun J; Kim MS; Mendell JT; Xie Y
Genome Biol; 2014 Jan; 15(1):R18. PubMed ID: 24451213
[TBL] [Abstract][Full Text] [Related]
25. A deep boosting based approach for capturing the sequence binding preferences of RNA-binding proteins from high-throughput CLIP-seq data.
Li S; Dong F; Wu Y; Zhang S; Zhang C; Liu X; Jiang T; Zeng J
Nucleic Acids Res; 2017 Aug; 45(14):e129. PubMed ID: 28575488
[TBL] [Abstract][Full Text] [Related]
26. Characterization of the B Cell Transcriptome Bound by RNA-Binding Proteins with iCLIP.
Díaz-Muñoz MD; Monzón-Casanova E; Turner M
Methods Mol Biol; 2017; 1623():159-179. PubMed ID: 28589356
[TBL] [Abstract][Full Text] [Related]
27. Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions.
Van Nostrand EL; Huelga SC; Yeo GW
Adv Exp Med Biol; 2016; 907():1-28. PubMed ID: 27256380
[TBL] [Abstract][Full Text] [Related]
28. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
[TBL] [Abstract][Full Text] [Related]
29. CircInteractome: A web tool for exploring circular RNAs and their interacting proteins and microRNAs.
Dudekula DB; Panda AC; Grammatikakis I; De S; Abdelmohsen K; Gorospe M
RNA Biol; 2016; 13(1):34-42. PubMed ID: 26669964
[TBL] [Abstract][Full Text] [Related]
30. Finding RNA-Protein Interaction Sites Using HMMs.
Wang T; Yun J; Xie Y; Xiao G
Methods Mol Biol; 2017; 1552():177-184. PubMed ID: 28224499
[TBL] [Abstract][Full Text] [Related]
31. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
32. iSeq: Web-Based RNA-seq Data Analysis and Visualization.
Zhang C; Fan C; Gan J; Zhu P; Kong L; Li C
Methods Mol Biol; 2018; 1754():167-181. PubMed ID: 29536443
[TBL] [Abstract][Full Text] [Related]
33. Computational Prediction of RNA-Protein Interactions.
Mann CM; Muppirala UK; Dobbs D
Methods Mol Biol; 2017; 1543():169-185. PubMed ID: 28349426
[TBL] [Abstract][Full Text] [Related]
34. svist4get: a simple visualization tool for genomic tracks from sequencing experiments.
Egorov AA; Sakharova EA; Anisimova AS; Dmitriev SE; Gladyshev VN; Kulakovskiy IV
BMC Bioinformatics; 2019 Mar; 20(1):113. PubMed ID: 30841857
[TBL] [Abstract][Full Text] [Related]
35. RNA Bind-n-Seq: Measuring the Binding Affinity Landscape of RNA-Binding Proteins.
Lambert NJ; Robertson AD; Burge CB
Methods Enzymol; 2015; 558():465-493. PubMed ID: 26068750
[TBL] [Abstract][Full Text] [Related]
36. Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation.
Lewinski M; Steffen A; Kachariya N; Elgner M; Schmal C; Messini N; Köster T; Reichel M; Sattler M; Zarnack K; Staiger D
Plant J; 2024 Apr; 118(1):203-224. PubMed ID: 38124335
[TBL] [Abstract][Full Text] [Related]
37. Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data.
Carazo F; Gimeno M; Ferrer-Bonsoms JA; Rubio A
BMC Genomics; 2019 Jun; 20(1):521. PubMed ID: 31238884
[TBL] [Abstract][Full Text] [Related]
38. Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts.
Gillen AE; Yamamoto TM; Kline E; Hesselberth JR; Kabos P
BMC Genomics; 2016 May; 17():338. PubMed ID: 27150721
[TBL] [Abstract][Full Text] [Related]
39. Improved library preparation with the new iCLIP2 protocol.
Buchbender A; Mutter H; Sutandy FXR; Körtel N; Hänel H; Busch A; Ebersberger S; König J
Methods; 2020 Jun; 178():33-48. PubMed ID: 31610236
[TBL] [Abstract][Full Text] [Related]
40. CSEQ-SIMULATOR: A DATA SIMULATOR FOR CLIP-SEQ EXPERIMENTS.
Kassuhn W; Ohler U; Drewe P
Pac Symp Biocomput; 2016; 21():433-44. PubMed ID: 26776207
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]