186 related articles for article (PubMed ID: 32185014)
1. Do you cov me? Effect of coverage reduction on metagenome shotgun sequencing studies.
Cattonaro F; Spadotto A; Radovic S; Marroni F
F1000Res; 2018; 7():1767. PubMed ID: 32185014
[TBL] [Abstract][Full Text] [Related]
2. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
3. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
García-López R; Vázquez-Castellanos JF; Moya A
Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
[TBL] [Abstract][Full Text] [Related]
4. Reduced metagenome sequencing for strain-resolution taxonomic profiles.
Snipen L; Angell IL; Rognes T; Rudi K
Microbiome; 2021 Mar; 9(1):79. PubMed ID: 33781324
[TBL] [Abstract][Full Text] [Related]
5. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
6. Quantitative Assessment of Shotgun Metagenomics and 16S rDNA Amplicon Sequencing in the Study of Human Gut Microbiome.
Laudadio I; Fulci V; Palone F; Stronati L; Cucchiara S; Carissimi C
OMICS; 2018 Apr; 22(4):248-254. PubMed ID: 29652573
[TBL] [Abstract][Full Text] [Related]
7. Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.
Papudeshi B; Haggerty JM; Doane M; Morris MM; Walsh K; Beattie DT; Pande D; Zaeri P; Silva GGZ; Thompson F; Edwards RA; Dinsdale EA
BMC Genomics; 2017 Nov; 18(1):915. PubMed ID: 29183281
[TBL] [Abstract][Full Text] [Related]
8. High-resolution shotgun metagenomics: the more data, the better?
Tremblay J; Schreiber L; Greer CW
Brief Bioinform; 2022 Nov; 23(6):. PubMed ID: 36352504
[TBL] [Abstract][Full Text] [Related]
9. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
[TBL] [Abstract][Full Text] [Related]
10. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
Pan W; Chen B; Xu Y
Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
[TBL] [Abstract][Full Text] [Related]
11. Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
Hooper SD; Dalevi D; Pati A; Mavromatis K; Ivanova NN; Kyrpides NC
Bioinformatics; 2010 Feb; 26(3):295-301. PubMed ID: 20008478
[TBL] [Abstract][Full Text] [Related]
12. CAMISIM: simulating metagenomes and microbial communities.
Fritz A; Hofmann P; Majda S; Dahms E; Dröge J; Fiedler J; Lesker TR; Belmann P; DeMaere MZ; Darling AE; Sczyrba A; Bremges A; McHardy AC
Microbiome; 2019 Feb; 7(1):17. PubMed ID: 30736849
[TBL] [Abstract][Full Text] [Related]
13. Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data.
Mangalea MR; Keift K; Duerkop BA; Anantharaman K
Methods Mol Biol; 2023; 2649():317-337. PubMed ID: 37258871
[TBL] [Abstract][Full Text] [Related]
14. An Introduction to Whole-Metagenome Shotgun Sequencing Studies.
Joseph TA; Pe'er I
Methods Mol Biol; 2021; 2243():107-122. PubMed ID: 33606255
[TBL] [Abstract][Full Text] [Related]
15. From Whole Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool.
Rampelli S; Turroni S; Candela M
Methods Mol Biol; 2024; 2732():23-28. PubMed ID: 38060115
[TBL] [Abstract][Full Text] [Related]
16. Pre- and post-sequencing recommendations for functional annotation of human fecal metagenomes.
Treiber ML; Taft DH; Korf I; Mills DA; Lemay DG
BMC Bioinformatics; 2020 Feb; 21(1):74. PubMed ID: 32093654
[TBL] [Abstract][Full Text] [Related]
17. Analysis and evaluation of different sequencing depths from 5 to 20 million reads in shotgun metagenomic sequencing, with optimal minimum depth being recommended.
Liu J; Wang X; Xie H; Zhong Q; Xia Y
Genome; 2022 Sep; 65(9):491-504. PubMed ID: 35939836
[TBL] [Abstract][Full Text] [Related]
18. Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples.
Chouvarine P; Wiehlmann L; Moran Losada P; DeLuca DS; Tümmler B
PLoS One; 2016; 11(10):e0165015. PubMed ID: 27760173
[TBL] [Abstract][Full Text] [Related]
19. Potential and pitfalls of eukaryotic metagenome skimming: a test case for lichens.
Greshake B; Zehr S; Dal Grande F; Meiser A; Schmitt I; Ebersberger I
Mol Ecol Resour; 2016 Mar; 16(2):511-23. PubMed ID: 26345272
[TBL] [Abstract][Full Text] [Related]
20. Direct identification and molecular characterization of zoonotic hazards in raw milk by metagenomics using
Grützke J; Gwida M; Deneke C; Brendebach H; Projahn M; Schattschneider A; Hofreuter D; El-Ashker M; Malorny B; Al Dahouk S
Microb Genom; 2021 May; 7(5):. PubMed ID: 33945456
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]