186 related articles for article (PubMed ID: 32185014)
21. ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data.
Deng Z; Delwart E
BMC Bioinformatics; 2021 Mar; 22(1):119. PubMed ID: 33706720
[TBL] [Abstract][Full Text] [Related]
22. HOME-BIO (sHOtgun MEtagenomic analysis of BIOlogical entities): a specific and comprehensive pipeline for metagenomic shotgun sequencing data analysis.
Ferravante C; Memoli D; Palumbo D; Ciaramella P; Di Loria A; D'Agostino Y; Nassa G; Rizzo F; Tarallo R; Weisz A; Giurato G
BMC Bioinformatics; 2021 Jul; 22(Suppl 7):106. PubMed ID: 34225648
[TBL] [Abstract][Full Text] [Related]
23. Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.
Huson DH; Tappu R; Bazinet AL; Xie C; Cummings MP; Nieselt K; Williams R
Microbiome; 2017 Jan; 5(1):11. PubMed ID: 28122610
[TBL] [Abstract][Full Text] [Related]
24. A de novo metagenomic assembly program for shotgun DNA reads.
Lai B; Ding R; Li Y; Duan L; Zhu H
Bioinformatics; 2012 Jun; 28(11):1455-62. PubMed ID: 22495746
[TBL] [Abstract][Full Text] [Related]
25. Characterization of Shallow Whole-Metagenome Shotgun Sequencing as a High-Accuracy and Low-Cost Method by Complicated Mock Microbiomes.
Xu W; Chen T; Pei Y; Guo H; Li Z; Yang Y; Zhang F; Yu J; Li X; Yang Y; Zhao B; Wu C
Front Microbiol; 2021; 12():678319. PubMed ID: 34394027
[TBL] [Abstract][Full Text] [Related]
26. Application of shotgun metagenomics sequencing and targeted sequence capture to detect circulating porcine viruses in the Dutch-German border region.
Schuele L; Lizarazo-Forero E; Strutzberg-Minder K; Schütze S; Löbert S; Lambrecht C; Harlizius J; Friedrich AW; Peter S; Rossen JWA; Couto N
Transbound Emerg Dis; 2022 Jul; 69(4):2306-2319. PubMed ID: 34347385
[TBL] [Abstract][Full Text] [Related]
27. Analysis of the microbiome: Advantages of whole genome shotgun versus 16S amplicon sequencing.
Ranjan R; Rani A; Metwally A; McGee HS; Perkins DL
Biochem Biophys Res Commun; 2016 Jan; 469(4):967-77. PubMed ID: 26718401
[TBL] [Abstract][Full Text] [Related]
28. Genovo: de novo assembly for metagenomes.
Laserson J; Jojic V; Koller D
J Comput Biol; 2011 Mar; 18(3):429-43. PubMed ID: 21385045
[TBL] [Abstract][Full Text] [Related]
29. The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
Gweon HS; Shaw LP; Swann J; De Maio N; AbuOun M; Niehus R; Hubbard ATM; Bowes MJ; Bailey MJ; Peto TEA; Hoosdally SJ; Walker AS; Sebra RP; Crook DW; Anjum MF; Read DS; Stoesser N;
Environ Microbiome; 2019 Oct; 14(1):7. PubMed ID: 33902704
[TBL] [Abstract][Full Text] [Related]
30. Shotgun metagenomics of soil invertebrate communities reflects taxonomy, biomass, and reference genome properties.
Schmidt A; Schneider C; Decker P; Hohberg K; Römbke J; Lehmitz R; Bálint M
Ecol Evol; 2022 Jul; 12(6):e8991. PubMed ID: 35784064
[TBL] [Abstract][Full Text] [Related]
31. Taxonomic binning of metagenome samples generated by next-generation sequencing technologies.
Dröge J; McHardy AC
Brief Bioinform; 2012 Nov; 13(6):646-55. PubMed ID: 22851513
[TBL] [Abstract][Full Text] [Related]
32. Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing.
Tsai YC; Conlan S; Deming C; ; Segre JA; Kong HH; Korlach J; Oh J
mBio; 2016 Feb; 7(1):e01948-15. PubMed ID: 26861018
[TBL] [Abstract][Full Text] [Related]
33. Mock community taxonomic classification performance of publicly available shotgun metagenomics pipelines.
Valencia EM; Maki KA; Dootz JN; Barb JJ
Sci Data; 2024 Jan; 11(1):81. PubMed ID: 38233447
[TBL] [Abstract][Full Text] [Related]
34. Snipe: highly sensitive pathogen detection from metagenomic sequencing data.
Huang L; Hong B; Yang W; Wang L; Yu R
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33822895
[TBL] [Abstract][Full Text] [Related]
35. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
Zou B; Li J; Zhou Q; Quan ZX
PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
[TBL] [Abstract][Full Text] [Related]
36. Evaluating the Information Content of Shallow Shotgun Metagenomics.
Hillmann B; Al-Ghalith GA; Shields-Cutler RR; Zhu Q; Gohl DM; Beckman KB; Knight R; Knights D
mSystems; 2018; 3(6):. PubMed ID: 30443602
[TBL] [Abstract][Full Text] [Related]
37. Measuring metagenome diversity and similarity with Hill numbers.
Ma ZS; Li L
Mol Ecol Resour; 2018 Nov; 18(6):1339-1355. PubMed ID: 29985552
[TBL] [Abstract][Full Text] [Related]
38. drVM: a new tool for efficient genome assembly of known eukaryotic viruses from metagenomes.
Lin HH; Liao YC
Gigascience; 2017 Feb; 6(2):1-10. PubMed ID: 28369462
[TBL] [Abstract][Full Text] [Related]
39. Soup to Tree: The Phylogeny of Beetles Inferred by Mitochondrial Metagenomics of a Bornean Rainforest Sample.
Crampton-Platt A; Timmermans MJ; Gimmel ML; Kutty SN; Cockerill TD; Vun Khen C; Vogler AP
Mol Biol Evol; 2015 Sep; 32(9):2302-16. PubMed ID: 25957318
[TBL] [Abstract][Full Text] [Related]
40. Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity.
Bankevich A; Pevzner PA
Cell Syst; 2018 Aug; 7(2):192-200.e3. PubMed ID: 30056005
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]