333 related articles for article (PubMed ID: 32214105)
1. Generating high quality libraries for DIA MS with empirically corrected peptide predictions.
Searle BC; Swearingen KE; Barnes CA; Schmidt T; Gessulat S; Küster B; Wilhelm M
Nat Commun; 2020 Mar; 11(1):1548. PubMed ID: 32214105
[TBL] [Abstract][Full Text] [Related]
2. Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry.
Searle BC; Pino LK; Egertson JD; Ting YS; Lawrence RT; MacLean BX; Villén J; MacCoss MJ
Nat Commun; 2018 Dec; 9(1):5128. PubMed ID: 30510204
[TBL] [Abstract][Full Text] [Related]
3. Reproducibility, Specificity and Accuracy of Relative Quantification Using Spectral Library-based Data-independent Acquisition.
Barkovits K; Pacharra S; Pfeiffer K; Steinbach S; Eisenacher M; Marcus K; Uszkoreit J
Mol Cell Proteomics; 2020 Jan; 19(1):181-197. PubMed ID: 31699904
[TBL] [Abstract][Full Text] [Related]
4. Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries.
Van Puyvelde B; Willems S; Gabriels R; Daled S; De Clerck L; Vande Casteele S; Staes A; Impens F; Deforce D; Martens L; Degroeve S; Dhaenens M
Proteomics; 2020 Feb; 20(3-4):e1900306. PubMed ID: 31981311
[TBL] [Abstract][Full Text] [Related]
5. Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries.
Pino LK; Just SC; MacCoss MJ; Searle BC
Mol Cell Proteomics; 2020 Jul; 19(7):1088-1103. PubMed ID: 32312845
[TBL] [Abstract][Full Text] [Related]
6. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
[TBL] [Abstract][Full Text] [Related]
7. DeepPhospho accelerates DIA phosphoproteome profiling through in silico library generation.
Lou R; Liu W; Li R; Li S; He X; Shui W
Nat Commun; 2021 Nov; 12(1):6685. PubMed ID: 34795227
[TBL] [Abstract][Full Text] [Related]
8. Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data.
Heil LR; Fondrie WE; McGann CD; Federation AJ; Noble WS; MacCoss MJ; Keich U
J Proteome Res; 2022 Jun; 21(6):1382-1391. PubMed ID: 35549345
[TBL] [Abstract][Full Text] [Related]
9. [Application of peptide retention time in proteome research].
Shao C; Gao Y
Se Pu; 2010 Feb; 28(2):128-34. PubMed ID: 20556949
[TBL] [Abstract][Full Text] [Related]
10. PECAN: library-free peptide detection for data-independent acquisition tandem mass spectrometry data.
Ting YS; Egertson JD; Bollinger JG; Searle BC; Payne SH; Noble WS; MacCoss MJ
Nat Methods; 2017 Sep; 14(9):903-908. PubMed ID: 28783153
[TBL] [Abstract][Full Text] [Related]
11. In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics.
Yang Y; Liu X; Shen C; Lin Y; Yang P; Qiao L
Nat Commun; 2020 Jan; 11(1):146. PubMed ID: 31919359
[TBL] [Abstract][Full Text] [Related]
12. Sensitive Immunopeptidomics by Leveraging Available Large-Scale Multi-HLA Spectral Libraries, Data-Independent Acquisition, and MS/MS Prediction.
Pak H; Michaux J; Huber F; Chong C; Stevenson BJ; Müller M; Coukos G; Bassani-Sternberg M
Mol Cell Proteomics; 2021; 20():100080. PubMed ID: 33845167
[TBL] [Abstract][Full Text] [Related]
13. Proteome-Derived Peptide Libraries for Deep Specificity Profiling of N-terminal Modification Reagents.
Bridge HN; Weeks AM
Curr Protoc; 2023 Jun; 3(6):e798. PubMed ID: 37283519
[TBL] [Abstract][Full Text] [Related]
14. Protease specificity profiling by tandem mass spectrometry using proteome-derived peptide libraries.
Schilling O; auf dem Keller U; Overall CM
Methods Mol Biol; 2011; 753():257-72. PubMed ID: 21604128
[TBL] [Abstract][Full Text] [Related]
15. High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis.
Tiwary S; Levy R; Gutenbrunner P; Salinas Soto F; Palaniappan KK; Deming L; Berndl M; Brant A; Cimermancic P; Cox J
Nat Methods; 2019 Jun; 16(6):519-525. PubMed ID: 31133761
[TBL] [Abstract][Full Text] [Related]
16. Comprehensive Prostate Fluid-Based Spectral Libraries for Enhanced Protein Detection in Urine.
Ha A; Khoo A; Ignatchenko V; Khan S; Waas M; Vesprini D; Liu SK; Nyalwidhe JO; Semmes OJ; Boutros PC; Kislinger T
J Proteome Res; 2024 May; 23(5):1768-1778. PubMed ID: 38580319
[TBL] [Abstract][Full Text] [Related]
17. Extending the coverage of spectral libraries: a neighbor-based approach to predicting intensities of peptide fragmentation spectra.
Ji C; Arnold RJ; Sokoloski KJ; Hardy RW; Tang H; Radivojac P
Proteomics; 2013 Mar; 13(5):756-65. PubMed ID: 23303707
[TBL] [Abstract][Full Text] [Related]
18. DISMS2: A flexible algorithm for direct proteome- wide distance calculation of LC-MS/MS runs.
Rieder V; Blank-Landeshammer B; Stuhr M; Schell T; Biß K; Kollipara L; Meyer A; Pfenninger M; Westphal H; Sickmann A; Rahnenführer J
BMC Bioinformatics; 2017 Mar; 18(1):148. PubMed ID: 28253837
[TBL] [Abstract][Full Text] [Related]
19. Combinatorial approach for large-scale identification of linked peptides from tandem mass spectrometry spectra.
Wang J; Anania VG; Knott J; Rush J; Lill JR; Bourne PE; Bandeira N
Mol Cell Proteomics; 2014 Apr; 13(4):1128-36. PubMed ID: 24493012
[TBL] [Abstract][Full Text] [Related]
20. Data-Independent Acquisition Coupled to Visible Laser-Induced Dissociation at 473 nm (DIA-LID) for Peptide-Centric Specific Analysis of Cysteine-Containing Peptide Subset.
Garcia L; Girod M; Rompais M; Dugourd P; Carapito C; Lemoine J
Anal Chem; 2018 Mar; 90(6):3928-3935. PubMed ID: 29465226
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]