These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

163 related articles for article (PubMed ID: 32243433)

  • 21. Plasmid detection and assembly in genomic and metagenomic data sets.
    Antipov D; Raiko M; Lapidus A; Pevzner PA
    Genome Res; 2019 Jun; 29(6):961-968. PubMed ID: 31048319
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology.
    Szczepanowski R; Bekel T; Goesmann A; Krause L; Krömeke H; Kaiser O; Eichler W; Pühler A; Schlüter A
    J Biotechnol; 2008 Aug; 136(1-2):54-64. PubMed ID: 18586057
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PlasBin-flow: a flow-based MILP algorithm for plasmid contigs binning.
    Mane A; Faizrahnemoon M; Vinař T; Brejová B; Chauve C
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i288-i296. PubMed ID: 37387134
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Classification of bacterial plasmid and chromosome derived sequences using machine learning.
    Zou X; Nguyen M; Overbeek J; Cao B; Davis JJ
    PLoS One; 2022; 17(12):e0279280. PubMed ID: 36525447
    [TBL] [Abstract][Full Text] [Related]  

  • 25. gplas: a comprehensive tool for plasmid analysis using short-read graphs.
    Arredondo-Alonso S; Bootsma M; Hein Y; Rogers MRC; Corander J; Willems RJL; Schürch AC
    Bioinformatics; 2020 Jun; 36(12):3874-3876. PubMed ID: 32271863
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Plasmer: an Accurate and Sensitive Bacterial Plasmid Prediction Tool Based on Machine Learning of Shared k-mers and Genomic Features.
    Zhu Q; Gao S; Xiao B; He Z; Hu S
    Microbiol Spectr; 2023 Jun; 11(3):e0464522. PubMed ID: 37191574
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Comparison of de-novo assembly tools for plasmid metagenome analysis.
    Gupta SK; Raza S; Unno T
    Genes Genomics; 2019 Sep; 41(9):1077-1083. PubMed ID: 31187446
    [TBL] [Abstract][Full Text] [Related]  

  • 28. MOBFinder: a tool for mobilization typing of plasmid metagenomic fragments based on a language model.
    Feng T; Wu S; Zhou H; Fang Z
    Gigascience; 2024 Jan; 13():. PubMed ID: 39101782
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Resolving plasmid structures in
    George S; Pankhurst L; Hubbard A; Votintseva A; Stoesser N; Sheppard AE; Mathers A; Norris R; Navickaite I; Eaton C; Iqbal Z; Crook DW; Phan HTT
    Microb Genom; 2017 Aug; 3(8):e000118. PubMed ID: 29026658
    [TBL] [Abstract][Full Text] [Related]  

  • 30. PlasCAT: Plasmid Cloud Assembly Tool.
    Peccoud S; Berezin CT; Hernandez SI; Peccoud J
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38696761
    [TBL] [Abstract][Full Text] [Related]  

  • 31. SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies.
    Aytan-Aktug D; Grigorjev V; Szarvas J; Clausen PTLC; Munk P; Nguyen M; Davis JJ; Aarestrup FM; Lund O
    Microbiol Spectr; 2022 Dec; 10(6):e0264122. PubMed ID: 36377945
    [TBL] [Abstract][Full Text] [Related]  

  • 32. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken).
    Valenzuela-González F; Martínez-Porchas M; Villalpando-Canchola E; Vargas-Albores F
    J Microbiol Methods; 2016 Mar; 122():38-42. PubMed ID: 26812576
    [TBL] [Abstract][Full Text] [Related]  

  • 34. PLACNETw: a web-based tool for plasmid reconstruction from bacterial genomes.
    Vielva L; de Toro M; Lanza VF; de la Cruz F
    Bioinformatics; 2017 Dec; 33(23):3796-3798. PubMed ID: 29036591
    [TBL] [Abstract][Full Text] [Related]  

  • 35. RFPlasmid: predicting plasmid sequences from short-read assembly data using machine learning.
    van der Graaf-van Bloois L; Wagenaar JA; Zomer AL
    Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34846288
    [TBL] [Abstract][Full Text] [Related]  

  • 36. PPR-Meta: a tool for identifying phages and plasmids from metagenomic fragments using deep learning.
    Fang Z; Tan J; Wu S; Li M; Xu C; Xie Z; Zhu H
    Gigascience; 2019 Jun; 8(6):. PubMed ID: 31220250
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria.
    Aun E; Brauer A; Kisand V; Tenson T; Remm M
    PLoS Comput Biol; 2018 Oct; 14(10):e1006434. PubMed ID: 30346947
    [TBL] [Abstract][Full Text] [Related]  

  • 38. MetaCAA: A clustering-aided methodology for efficient assembly of metagenomic datasets.
    Reddy RM; Mohammed MH; Mande SS
    Genomics; 2014; 103(2-3):161-8. PubMed ID: 24607570
    [TBL] [Abstract][Full Text] [Related]  

  • 39. NxTrim: optimized trimming of Illumina mate pair reads.
    O'Connell J; Schulz-Trieglaff O; Carlson E; Hims MM; Gormley NA; Cox AJ
    Bioinformatics; 2015 Jun; 31(12):2035-7. PubMed ID: 25661542
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Comparing thousands of circular genomes using the CGView Comparison Tool.
    Grant JR; Arantes AS; Stothard P
    BMC Genomics; 2012 May; 13():202. PubMed ID: 22621371
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.