These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
182 related articles for article (PubMed ID: 32245405)
1. pyCancerSig: subclassifying human cancer with comprehensive single nucleotide, structural and microsatellite mutational signature deconstruction from whole genome sequencing. Thutkawkorapin J; Eisfeldt J; Tham E; Nilsson D BMC Bioinformatics; 2020 Apr; 21(1):128. PubMed ID: 32245405 [TBL] [Abstract][Full Text] [Related]
2. FIREVAT: finding reliable variants without artifacts in human cancer samples using etiologically relevant mutational signatures. Kim H; Lee AJ; Lee J; Chun H; Ju YS; Hong D Genome Med; 2019 Dec; 11(1):81. PubMed ID: 31847917 [TBL] [Abstract][Full Text] [Related]
3. Classification of breast cancer patients using somatic mutation profiles and machine learning approaches. Vural S; Wang X; Guda C BMC Syst Biol; 2016 Aug; 10 Suppl 3(Suppl 3):62. PubMed ID: 27587275 [TBL] [Abstract][Full Text] [Related]
4. Analysis of 7,815 cancer exomes reveals associations between mutational processes and somatic driver mutations. Poulos RC; Wong YT; Ryan R; Pang H; Wong JWH PLoS Genet; 2018 Nov; 14(11):e1007779. PubMed ID: 30412573 [TBL] [Abstract][Full Text] [Related]
5. Mutational Signatures in Cancer (MuSiCa): a web application to implement mutational signatures analysis in cancer samples. Díaz-Gay M; Vila-Casadesús M; Franch-Expósito S; Hernández-Illán E; Lozano JJ; Castellví-Bel S BMC Bioinformatics; 2018 Jun; 19(1):224. PubMed ID: 29898651 [TBL] [Abstract][Full Text] [Related]
6. Modeling clinical and molecular covariates of mutational process activity in cancer. Robinson W; Sharan R; Leiserson MDM Bioinformatics; 2019 Jul; 35(14):i492-i500. PubMed ID: 31510643 [TBL] [Abstract][Full Text] [Related]
7. SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events. Bergstrom EN; Huang MN; Mahto U; Barnes M; Stratton MR; Rozen SG; Alexandrov LB BMC Genomics; 2019 Aug; 20(1):685. PubMed ID: 31470794 [TBL] [Abstract][Full Text] [Related]
8. MutSignatures: an R package for extraction and analysis of cancer mutational signatures. Fantini D; Vidimar V; Yu Y; Condello S; Meeks JJ Sci Rep; 2020 Oct; 10(1):18217. PubMed ID: 33106540 [TBL] [Abstract][Full Text] [Related]
9. SigsPack, a package for cancer mutational signatures. Schumann F; Blanc E; Messerschmidt C; Blankenstein T; Busse A; Beule D BMC Bioinformatics; 2019 Sep; 20(1):450. PubMed ID: 31477009 [TBL] [Abstract][Full Text] [Related]
10. Hidden Markov models lead to higher resolution maps of mutation signature activity in cancer. Wojtowicz D; Sason I; Huang X; Kim YA; Leiserson MDM; Przytycka TM; Sharan R Genome Med; 2019 Jul; 11(1):49. PubMed ID: 31349863 [TBL] [Abstract][Full Text] [Related]
11. MutSpec: a Galaxy toolbox for streamlined analyses of somatic mutation spectra in human and mouse cancer genomes. Ardin M; Cahais V; Castells X; Bouaoun L; Byrnes G; Herceg Z; Zavadil J; Olivier M BMC Bioinformatics; 2016 Apr; 17():170. PubMed ID: 27091472 [TBL] [Abstract][Full Text] [Related]
13. CoMutPlotter: a web tool for visual summary of mutations in cancer cohorts. Huang PJ; Lin HH; Lee CC; Chiu LY; Wu SM; Yeh YM; Tang P; Chiu CH; Lyu PC; Tsai PC BMC Med Genomics; 2019 Jul; 12(Suppl 5):99. PubMed ID: 31296206 [TBL] [Abstract][Full Text] [Related]