142 related articles for article (PubMed ID: 32271874)
1. MONET: a toolbox integrating top-performing methods for network modularization.
Tomasoni M; Gómez S; Crawford J; Zhang W; Choobdar S; Marbach D; Bergmann S
Bioinformatics; 2020 Jun; 36(12):3920-3921. PubMed ID: 32271874
[TBL] [Abstract][Full Text] [Related]
2. MoNET: an R package for multi-omic network analysis.
Li J; Chen F; Liang H; Yan J
Bioinformatics; 2022 Jan; 38(4):1165-1167. PubMed ID: 34694378
[TBL] [Abstract][Full Text] [Related]
3. MODifieR: an Ensemble R Package for Inference of Disease Modules from Transcriptomics Networks.
de Weerd HA; Badam TVS; Martínez-Enguita D; Åkesson J; Muthas D; Gustafsson M; Lubovac-Pilav Z
Bioinformatics; 2020 Jun; 36(12):3918-3919. PubMed ID: 32271876
[TBL] [Abstract][Full Text] [Related]
4. PPaxe: easy extraction of protein occurrence and interactions from the scientific literature.
Castillo-Lara S; Abril JF
Bioinformatics; 2019 Jul; 35(14):2523-2524. PubMed ID: 30500875
[TBL] [Abstract][Full Text] [Related]
5. Modular organization of protein interaction networks.
Luo F; Yang Y; Chen CF; Chang R; Zhou J; Scheuermann RH
Bioinformatics; 2007 Jan; 23(2):207-14. PubMed ID: 17092991
[TBL] [Abstract][Full Text] [Related]
6. PyPore: a python toolbox for nanopore sequencing data handling.
Semeraro R; Magi A
Bioinformatics; 2019 Nov; 35(21):4445-4447. PubMed ID: 30993318
[TBL] [Abstract][Full Text] [Related]
7. diSTruct v1.0: generating biomolecular structures from distance constraints.
Taubert O; Reinartz I; Meyerhenke H; Schug A
Bioinformatics; 2019 Dec; 35(24):5337-5338. PubMed ID: 31329240
[TBL] [Abstract][Full Text] [Related]
8. Identifying communities from multiplex biological networks by randomized optimization of modularity.
Didier G; Valdeolivas A; Baudot A
F1000Res; 2018; 7():1042. PubMed ID: 30210790
[TBL] [Abstract][Full Text] [Related]
9. INfORM: Inference of NetwOrk Response Modules.
Marwah VS; Kinaret PAS; Serra A; Scala G; Lauerma A; Fortino V; Greco D
Bioinformatics; 2018 Jun; 34(12):2136-2138. PubMed ID: 29425308
[TBL] [Abstract][Full Text] [Related]
10. ksrates: positioning whole-genome duplications relative to speciation events in KS distributions.
Sensalari C; Maere S; Lohaus R
Bioinformatics; 2022 Jan; 38(2):530-532. PubMed ID: 34406368
[TBL] [Abstract][Full Text] [Related]
11. YAMACS: a graphical interface for GROMACS.
Sarkar A; Santoro J; Di Biasi L; Marrafino F; Piotto S
Bioinformatics; 2022 Sep; 38(19):4645-4646. PubMed ID: 35997557
[TBL] [Abstract][Full Text] [Related]
12. Assessment of network module identification across complex diseases.
Choobdar S; Ahsen ME; Crawford J; Tomasoni M; Fang T; Lamparter D; Lin J; Hescott B; Hu X; Mercer J; Natoli T; Narayan R; ; Subramanian A; Zhang JD; Stolovitzky G; Kutalik Z; Lage K; Slonim DK; Saez-Rodriguez J; Cowen LJ; Bergmann S; Marbach D
Nat Methods; 2019 Sep; 16(9):843-852. PubMed ID: 31471613
[TBL] [Abstract][Full Text] [Related]
13. Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance.
Šošic M; Šikic M
Bioinformatics; 2017 May; 33(9):1394-1395. PubMed ID: 28453688
[TBL] [Abstract][Full Text] [Related]
14. Comparison of single and module-based methods for modeling gene regulatory networks.
Hernaez M; Blatti C; Gevaert O
Bioinformatics; 2020 Jan; 36(2):558-567. PubMed ID: 31287491
[TBL] [Abstract][Full Text] [Related]
15. VOLTA: adVanced mOLecular neTwork Analysis.
Pavel A; Federico A; Del Giudice G; Serra A; Greco D
Bioinformatics; 2021 Dec; 37(23):4587-4588. PubMed ID: 34498028
[TBL] [Abstract][Full Text] [Related]
16. SPECTRE: a suite of phylogenetic tools for reticulate evolution.
Bastkowski S; Mapleson D; Spillner A; Wu T; Balvociute M; Moulton V
Bioinformatics; 2018 Mar; 34(6):1056-1057. PubMed ID: 29186450
[TBL] [Abstract][Full Text] [Related]
17. PESTO: Parameter EStimation TOolbox.
Stapor P; Weindl D; Ballnus B; Hug S; Loos C; Fiedler A; Krause S; Hroß S; Fröhlich F; Hasenauer J
Bioinformatics; 2018 Feb; 34(4):705-707. PubMed ID: 29069312
[TBL] [Abstract][Full Text] [Related]
18. Deterministic graph-theoretic algorithm for detecting modules in biological interaction networks.
Chang RL; Luo F; Johnson S; Scheuermann RH
Int J Bioinform Res Appl; 2010; 6(2):101-19. PubMed ID: 20223734
[TBL] [Abstract][Full Text] [Related]
19. MODE-TASK: large-scale protein motion tools.
Ross C; Nizami B; Glenister M; Sheik Amamuddy O; Atilgan AR; Atilgan C; Tastan Bishop Ö
Bioinformatics; 2018 Nov; 34(21):3759-3763. PubMed ID: 29850770
[TBL] [Abstract][Full Text] [Related]
20. Phigaro: high-throughput prophage sequence annotation.
Starikova EV; Tikhonova PO; Prianichnikov NA; Rands CM; Zdobnov EM; Ilina EN; Govorun VM
Bioinformatics; 2020 Jun; 36(12):3882-3884. PubMed ID: 32311023
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
