These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

74 related articles for article (PubMed ID: 32277129)

  • 1. A new tool CovReport generates easy-to-understand sequencing coverage summary for diagnostic reports.
    Gorokhov M; Cerino M; Mortreux J; Riccardi F; Lévy N; Bartoli M; Krahn M; Gorokhova S
    Sci Rep; 2020 Apr; 10(1):6247. PubMed ID: 32277129
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.
    Wang W; Hu W; Hou F; Hu P; Wei Z
    J Med Genet; 2012 Dec; 49(12):753-5. PubMed ID: 23024288
    [TBL] [Abstract][Full Text] [Related]  

  • 3. AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting.
    Wünsch C; Banck H; Müller-Tidow C; Dugas M
    BMC Med Genomics; 2020 Feb; 13(1):17. PubMed ID: 32019565
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data.
    Shahryary Y; Hazarika RR; Johannes F
    BMC Genomics; 2020 Jul; 21(1):479. PubMed ID: 32660416
    [TBL] [Abstract][Full Text] [Related]  

  • 5. VirAmp: a galaxy-based viral genome assembly pipeline.
    Wan Y; Renner DW; Albert I; Szpara ML
    Gigascience; 2015; 4():19. PubMed ID: 25918639
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Use of Whole-Exome Sequencing for Diagnosis of Limb-Girdle Muscular Dystrophy: Outcomes and Lessons Learned.
    Ghaoui R; Cooper ST; Lek M; Jones K; Corbett A; Reddel SW; Needham M; Liang C; Waddell LB; Nicholson G; O'Grady G; Kaur S; Ong R; Davis M; Sue CM; Laing NG; North KN; MacArthur DG; Clarke NF
    JAMA Neurol; 2015 Dec; 72(12):1424-32. PubMed ID: 26436962
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DaMold: A data-mining platform for variant annotation and visualization in molecular diagnostics research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    Hum Mutat; 2017 Jul; 38(7):778-787. PubMed ID: 28397319
    [TBL] [Abstract][Full Text] [Related]  

  • 8. VarWatch-A stand-alone software tool for variant matching.
    Fredrich B; Schmöhl M; Junge O; Gundlach S; Ellinghaus D; Pfeufer A; Bettecken T; Siddiqui R; Franke A; Wienker TF; Hoeppner MP; Krawczak M
    PLoS One; 2019; 14(4):e0215618. PubMed ID: 31022234
    [TBL] [Abstract][Full Text] [Related]  

  • 9. prfectBLAST: a platform-independent portable front end for the command terminal BLAST+ stand-alone suite.
    Santiago-Sotelo P; Ramirez-Prado JH
    Biotechniques; 2012 Nov; 53(5):299-300. PubMed ID: 23148880
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data.
    Graña O; López-Fernández H; Fdez-Riverola F; González Pisano D; Glez-Peña D
    Bioinformatics; 2018 Apr; 34(8):1414-1415. PubMed ID: 29211825
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data.
    Anslan S; Bahram M; Hiiesalu I; Tedersoo L
    Mol Ecol Resour; 2017 Nov; 17(6):e234-e240. PubMed ID: 28544559
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FMFilter: A fast model based variant filtering tool.
    Akgün M; Faruk Gerdan Ö; Görmez Z; Demirci H
    J Biomed Inform; 2016 Apr; 60():319-27. PubMed ID: 26925517
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ICO amplicon NGS data analysis: a Web tool for variant detection in common high-risk hereditary cancer genes analyzed by amplicon GS Junior next-generation sequencing.
    Lopez-Doriga A; Feliubadaló L; Menéndez M; Lopez-Doriga S; Morón-Duran FD; del Valle J; Tornero E; Montes E; Cuesta R; Campos O; Gómez C; Pineda M; González S; Moreno V; Capellá G; Lázaro C
    Hum Mutat; 2014 Mar; 35(3):271-7. PubMed ID: 24227591
    [TBL] [Abstract][Full Text] [Related]  

  • 14. WHATIF: An open-source desktop application for extraction and management of the incidental findings from next-generation sequencing variant data.
    Ye Z; Kadolph C; Strenn R; Wall D; McPherson E; Lin S
    Comput Biol Med; 2016 Jan; 68():165-9. PubMed ID: 25890833
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.
    Velmeshev D; Lally P; Magistri M; Faghihi MA
    BMC Genomics; 2016 Jan; 17():49. PubMed ID: 26758513
    [TBL] [Abstract][Full Text] [Related]  

  • 16. RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data.
    Ernlund AW; Schneider RJ; Ruggles KV
    BMC Genomics; 2018 Nov; 19(1):809. PubMed ID: 30409155
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing.
    Sato Y; Kojima K; Nariai N; Yamaguchi-Kabata Y; Kawai Y; Takahashi M; Mimori T; Nagasaki M
    BMC Genomics; 2014 Aug; 15(1):664. PubMed ID: 25103311
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    BMC Bioinformatics; 2016 Feb; 17():56. PubMed ID: 26830926
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Oasis: online analysis of small RNA deep sequencing data.
    Capece V; Garcia Vizcaino JC; Vidal R; Rahman RU; Pena Centeno T; Shomroni O; Suberviola I; Fischer A; Bonn S
    Bioinformatics; 2015 Jul; 31(13):2205-7. PubMed ID: 25701573
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.
    Rausch T; Fritz MH; Untergasser A; Benes V
    BMC Genomics; 2020 Mar; 21(1):230. PubMed ID: 32171249
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.