214 related articles for article (PubMed ID: 32293513)
1. HiNT: a computational method for detecting copy number variations and translocations from Hi-C data.
Wang S; Lee S; Chu C; Jain D; Kerpedjiev P; Nelson GM; Walsh JM; Alver BH; Park PJ
Genome Biol; 2020 Mar; 21(1):73. PubMed ID: 32293513
[TBL] [Abstract][Full Text] [Related]
2. Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours.
Harewood L; Kishore K; Eldridge MD; Wingett S; Pearson D; Schoenfelder S; Collins VP; Fraser P
Genome Biol; 2017 Jun; 18(1):125. PubMed ID: 28655341
[TBL] [Abstract][Full Text] [Related]
3. Precise detection of chromosomal translocation or inversion breakpoints by whole-genome sequencing.
Suzuki T; Tsurusaki Y; Nakashima M; Miyake N; Saitsu H; Takeda S; Matsumoto N
J Hum Genet; 2014 Dec; 59(12):649-54. PubMed ID: 25296578
[TBL] [Abstract][Full Text] [Related]
4. Identification and utilization of copy number information for correcting Hi-C contact map of cancer cell lines.
Khalil AIS; Muzaki SRBM; Chattopadhyay A; Sanyal A
BMC Bioinformatics; 2020 Nov; 21(1):506. PubMed ID: 33160308
[TBL] [Abstract][Full Text] [Related]
5. Identification of copy number variations and translocations in cancer cells from Hi-C data.
Chakraborty A; Ay F
Bioinformatics; 2018 Jan; 34(2):338-345. PubMed ID: 29048467
[TBL] [Abstract][Full Text] [Related]
6. 3D genome of multiple myeloma reveals spatial genome disorganization associated with copy number variations.
Wu P; Li T; Li R; Jia L; Zhu P; Liu Y; Chen Q; Tang D; Yu Y; Li C
Nat Commun; 2017 Dec; 8(1):1937. PubMed ID: 29203764
[TBL] [Abstract][Full Text] [Related]
7. A pipeline for complete characterization of complex germline rearrangements from long DNA reads.
Mitsuhashi S; Ohori S; Katoh K; Frith MC; Matsumoto N
Genome Med; 2020 Jul; 12(1):67. PubMed ID: 32731881
[TBL] [Abstract][Full Text] [Related]
8. Nucleome Analysis Reveals Structure-Function Relationships for Colon Cancer.
Seaman L; Chen H; Brown M; Wangsa D; Patterson G; Camps J; Omenn GS; Ried T; Rajapakse I
Mol Cancer Res; 2017 Jul; 15(7):821-830. PubMed ID: 28258094
[TBL] [Abstract][Full Text] [Related]
9. Chromosomal Translocations Detection in Cancer Cells Using Chromosomal Conformation Capture Data.
Adeel MM; Rehman K; Zhang Y; Arega Y; Li G
Genes (Basel); 2022 Jun; 13(7):. PubMed ID: 35885953
[TBL] [Abstract][Full Text] [Related]
10. Effective normalization for copy number variation in Hi-C data.
Servant N; Varoquaux N; Heard E; Barillot E; Vert JP
BMC Bioinformatics; 2018 Sep; 19(1):313. PubMed ID: 30189838
[TBL] [Abstract][Full Text] [Related]
11. Identifying gene disruptions in novel balanced de novo constitutional translocations in childhood cancer patients by whole-genome sequencing.
Ritter DI; Haines K; Cheung H; Davis CF; Lau CC; Berg JS; Brown CW; Thompson PA; Gibbs R; Wheeler DA; Plon SE
Genet Med; 2015 Oct; 17(10):831-5. PubMed ID: 25569436
[TBL] [Abstract][Full Text] [Related]
12. Toward Cytogenomics: Technical Assessment of Long-Read Nanopore Whole-Genome Sequencing for Detecting Large Chromosomal Alterations in Mantle Cell Lymphoma.
Hansen MH; Cédile O; Kjeldsen MLG; Thomassen M; Preiss B; von Neuhoff N; Abildgaard N; Nyvold CG
J Mol Diagn; 2023 Nov; 25(11):796-805. PubMed ID: 37683892
[TBL] [Abstract][Full Text] [Related]
13. Three-dimensional genome architecture influences partner selection for chromosomal translocations in human disease.
Engreitz JM; Agarwala V; Mirny LA
PLoS One; 2012; 7(9):e44196. PubMed ID: 23028501
[TBL] [Abstract][Full Text] [Related]
14. Bellerophon: a hybrid method for detecting interchromosomal rearrangements at base pair resolution using next-generation sequencing data.
Hayes M; Li J
BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S6. PubMed ID: 23734783
[TBL] [Abstract][Full Text] [Related]
15. Detecting Spatial Chromatin Organization by Chromosome Conformation Capture II: Genome-Wide Profiling by Hi-C.
Vietri Rudan M; Hadjur S; Sexton T
Methods Mol Biol; 2017; 1589():47-74. PubMed ID: 26900130
[TBL] [Abstract][Full Text] [Related]
16. Human Structural Variation: Mechanisms of Chromosome Rearrangements.
Weckselblatt B; Rudd MK
Trends Genet; 2015 Oct; 31(10):587-599. PubMed ID: 26209074
[TBL] [Abstract][Full Text] [Related]
17. Deciphering balanced translocations in infertile males by next-generation sequencing to identify candidate genes for spermatogenesis disorders.
Yammine T; Reynaud N; Lejeune H; Diguet F; Rollat-Farnier PA; Labalme A; Plotton I; Farra C; Sanlaville D; Chouery E; Schluth-Bolard C
Mol Hum Reprod; 2021 May; 27(6):. PubMed ID: 34009290
[TBL] [Abstract][Full Text] [Related]
18. SCOPE: A Normalization and Copy-Number Estimation Method for Single-Cell DNA Sequencing.
Wang R; Lin DY; Jiang Y
Cell Syst; 2020 May; 10(5):445-452.e6. PubMed ID: 32437686
[TBL] [Abstract][Full Text] [Related]
19. 3D disorganization and rearrangement of genome provide insights into pathogenesis of NAFLD by integrated Hi-C, Nanopore, and RNA sequencing.
Xu L; Yin L; Qi Y; Tan X; Gao M; Peng J
Acta Pharm Sin B; 2021 Oct; 11(10):3150-3164. PubMed ID: 34729306
[TBL] [Abstract][Full Text] [Related]
20. Copy number variant analysis using genome-wide mate-pair sequencing.
Smadbeck JB; Johnson SH; Smoley SA; Gaitatzes A; Drucker TM; Zenka RM; Kosari F; Murphy SJ; Hoppman N; Aypar U; Sukov WR; Jenkins RB; Kearney HM; Feldman AL; Vasmatzis G
Genes Chromosomes Cancer; 2018 Sep; 57(9):459-470. PubMed ID: 29726617
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
