151 related articles for article (PubMed ID: 32299343)
1. Unblended disjoint tree merging using GTM improves species tree estimation.
Smirnov V; Warnow T
BMC Genomics; 2020 Apr; 21(Suppl 2):235. PubMed ID: 32299343
[TBL] [Abstract][Full Text] [Related]
2. Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation.
Le T; Sy A; Molloy EK; Zhang Q; Rao S; Warnow T
IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(1):2-15. PubMed ID: 32750844
[TBL] [Abstract][Full Text] [Related]
3. Statistically consistent divide-and-conquer pipelines for phylogeny estimation using NJMerge.
Molloy EK; Warnow T
Algorithms Mol Biol; 2019; 14():14. PubMed ID: 31360216
[TBL] [Abstract][Full Text] [Related]
4. SVDquest: Improving SVDquartets species tree estimation using exact optimization within a constrained search space.
Vachaspati P; Warnow T
Mol Phylogenet Evol; 2018 Jul; 124():122-136. PubMed ID: 29530498
[TBL] [Abstract][Full Text] [Related]
5. Fragmentary Gene Sequences Negatively Impact Gene Tree and Species Tree Reconstruction.
Sayyari E; Whitfield JB; Mirarab S
Mol Biol Evol; 2017 Dec; 34(12):3279-3291. PubMed ID: 29029241
[TBL] [Abstract][Full Text] [Related]
6. BBCA: Improving the scalability of *BEAST using random binning.
Zimmermann T; Mirarab S; Warnow T
BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S11. PubMed ID: 25572469
[TBL] [Abstract][Full Text] [Related]
7. ASTRID: Accurate Species TRees from Internode Distances.
Vachaspati P; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S3. PubMed ID: 26449326
[TBL] [Abstract][Full Text] [Related]
8. STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency.
Islam M; Sarker K; Das T; Reaz R; Bayzid MS
BMC Genomics; 2020 Feb; 21(1):136. PubMed ID: 32039704
[TBL] [Abstract][Full Text] [Related]
9. The performance of coalescent-based species tree estimation methods under models of missing data.
Nute M; Chou J; Molloy EK; Warnow T
BMC Genomics; 2018 May; 19(Suppl 5):286. PubMed ID: 29745854
[TBL] [Abstract][Full Text] [Related]
10. SIESTA: enhancing searches for optimal supertrees and species trees.
Vachaspati P; Warnow T
BMC Genomics; 2018 May; 19(Suppl 5):252. PubMed ID: 29745851
[TBL] [Abstract][Full Text] [Related]
11. To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods.
Molloy EK; Warnow T
Syst Biol; 2018 Mar; 67(2):285-303. PubMed ID: 29029338
[TBL] [Abstract][Full Text] [Related]
12. A new fast method for inferring multiple consensus trees using k-medoids.
Tahiri N; Willems M; Makarenkov V
BMC Evol Biol; 2018 Apr; 18(1):48. PubMed ID: 29621975
[TBL] [Abstract][Full Text] [Related]
13. Forcing external constraints on tree inference using ASTRAL.
Rabiee M; Mirarab S
BMC Genomics; 2020 Apr; 21(Suppl 2):218. PubMed ID: 32299337
[TBL] [Abstract][Full Text] [Related]
14. Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes.
Ruane S; Raxworthy CJ; Lemmon AR; Lemmon EM; Burbrink FT
BMC Evol Biol; 2015 Oct; 15():221. PubMed ID: 26459325
[TBL] [Abstract][Full Text] [Related]
15. Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design.
McCormack JE; Huang H; Knowles LL
Syst Biol; 2009 Oct; 58(5):501-8. PubMed ID: 20525604
[TBL] [Abstract][Full Text] [Related]
16. Disk covering methods improve phylogenomic analyses.
Bayzid MS; Hunt T; Warnow T
BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S7. PubMed ID: 25572610
[TBL] [Abstract][Full Text] [Related]
17. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
18. A comparative study of SVDquartets and other coalescent-based species tree estimation methods.
Chou J; Gupta A; Yaduvanshi S; Davidson R; Nute M; Mirarab S; Warnow T
BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S2. PubMed ID: 26449249
[TBL] [Abstract][Full Text] [Related]
19. Consensus properties for the deep coalescence problem and their application for scalable tree search.
Lin HT; Burleigh JG; Eulenstein O
BMC Bioinformatics; 2012 Jun; 13 Suppl 10(Suppl 10):S12. PubMed ID: 22759417
[TBL] [Abstract][Full Text] [Related]
20. Inferring Metric Trees from Weighted Quartets via an Intertaxon Distance.
Yourdkhani S; Rhodes JA
Bull Math Biol; 2020 Jul; 82(7):97. PubMed ID: 32676801
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]