334 related articles for article (PubMed ID: 32302342)
1. Analysis of the nucleocytoplasmic shuttling RNA-binding protein HNRNPU using optimized HITS-CLIP method.
Yugami M; Okano H; Nakanishi A; Yano M
PLoS One; 2020; 15(4):e0231450. PubMed ID: 32302342
[TBL] [Abstract][Full Text] [Related]
2. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
3. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
4. PAR-CLIP: A Method for Transcriptome-Wide Identification of RNA Binding Protein Interaction Sites.
Danan C; Manickavel S; Hafner M
Methods Mol Biol; 2016; 1358():153-73. PubMed ID: 26463383
[TBL] [Abstract][Full Text] [Related]
5. cCLIP-Seq: Retrieval of Chimeric Reads from HITS-CLIP (CLIP-Seq) Libraries.
Alexiou P; Maragkakis M; Mourelatos Z; Vourekas A
Methods Mol Biol; 2018; 1680():87-100. PubMed ID: 29030843
[TBL] [Abstract][Full Text] [Related]
6. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
7. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
8. Proximity-CLIP Provides a Snapshot of Protein-Occupied RNA Elements at Subcellular Resolution and Transcriptome-Wide Scale.
Benhalevy D; Hafner M
Methods Mol Biol; 2020; 2166():283-305. PubMed ID: 32710416
[TBL] [Abstract][Full Text] [Related]
9. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
10. iCLIP--transcriptome-wide mapping of protein-RNA interactions with individual nucleotide resolution.
Konig J; Zarnack K; Rot G; Curk T; Kayikci M; Zupan B; Turner DJ; Luscombe NM; Ule J
J Vis Exp; 2011 Apr; (50):. PubMed ID: 21559008
[TBL] [Abstract][Full Text] [Related]
11. CLIPdb: a CLIP-seq database for protein-RNA interactions.
Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ
BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745
[TBL] [Abstract][Full Text] [Related]
12. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
Li Q; Uemura Y; Kawahara Y
Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
[TBL] [Abstract][Full Text] [Related]
13. PAR-CLIP for Discovering Target Sites of RNA-Binding Proteins.
Garzia A; Morozov P; Sajek M; Meyer C; Tuschl T
Methods Mol Biol; 2018; 1720():55-75. PubMed ID: 29236251
[TBL] [Abstract][Full Text] [Related]
14. Large-Scale Profiling of RBP-circRNA Interactions from Public CLIP-Seq Datasets.
Zhang M; Wang T; Xiao G; Xie Y
Genes (Basel); 2020 Jan; 11(1):. PubMed ID: 31947823
[TBL] [Abstract][Full Text] [Related]
15. Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts.
Gillen AE; Yamamoto TM; Kline E; Hesselberth JR; Kabos P
BMC Genomics; 2016 May; 17():338. PubMed ID: 27150721
[TBL] [Abstract][Full Text] [Related]
16. Design and bioinformatics analysis of genome-wide CLIP experiments.
Wang T; Xiao G; Chu Y; Zhang MQ; Corey DR; Xie Y
Nucleic Acids Res; 2015 Jun; 43(11):5263-74. PubMed ID: 25958398
[TBL] [Abstract][Full Text] [Related]
17. Seten: a tool for systematic identification and comparison of processes, phenotypes, and diseases associated with RNA-binding proteins from condition-specific CLIP-seq profiles.
Budak G; Srivastava R; Janga SC
RNA; 2017 Jun; 23(6):836-846. PubMed ID: 28336542
[TBL] [Abstract][Full Text] [Related]
18. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L; Förstner KU; Chao Y
Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
[TBL] [Abstract][Full Text] [Related]
19. Transcriptome-wide identification of RNA binding sites by CLIP-seq.
Murigneux V; Saulière J; Roest Crollius H; Le Hir H
Methods; 2013 Sep; 63(1):32-40. PubMed ID: 23545196
[TBL] [Abstract][Full Text] [Related]
20. sCLIP-an integrated platform to study RNA-protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs.
Kargapolova Y; Levin M; Lackner K; Danckwardt S
Nucleic Acids Res; 2017 Jun; 45(10):6074-6086. PubMed ID: 28334977
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
