190 related articles for article (PubMed ID: 32313030)
1. The FLAME-accelerated signalling tool (FaST) for facile parallelisation of flexible agent-based models of cell signalling.
Fullstone G; Guttà C; Beyer A; Rehm M
NPJ Syst Biol Appl; 2020 Apr; 6(1):10. PubMed ID: 32313030
[TBL] [Abstract][Full Text] [Related]
2. Rapid Particle-Based Simulations of Cellular Signalling with the FLAME-Accelerated Signalling Tool (FaST) and GPUs.
Fullstone G
Methods Mol Biol; 2023; 2634():191-212. PubMed ID: 37074580
[TBL] [Abstract][Full Text] [Related]
3. GPU accelerated biochemical network simulation.
Zhou Y; Liepe J; Sheng X; Stumpf MP; Barnes C
Bioinformatics; 2011 Mar; 27(6):874-6. PubMed ID: 21224286
[TBL] [Abstract][Full Text] [Related]
4. LASSIE: simulating large-scale models of biochemical systems on GPUs.
Tangherloni A; Nobile MS; Besozzi D; Mauri G; Cazzaniga P
BMC Bioinformatics; 2017 May; 18(1):246. PubMed ID: 28486952
[TBL] [Abstract][Full Text] [Related]
5. PARALLELISATION OF THE MODEL-BASED ITERATIVE RECONSTRUCTION ALGORITHM DIRA.
Örtenberg A; Magnusson M; Sandborg M; Alm Carlsson G; Malusek A
Radiat Prot Dosimetry; 2016 Jun; 169(1-4):405-9. PubMed ID: 26454270
[TBL] [Abstract][Full Text] [Related]
6. Optimisation of an exemplar oculomotor model using multi-objective genetic algorithms executed on a GPU-CPU combination.
Avramidis E; Akman OE
BMC Syst Biol; 2017 Mar; 11(1):40. PubMed ID: 28340582
[TBL] [Abstract][Full Text] [Related]
7. High performance cellular level agent-based simulation with FLAME for the GPU.
Richmond P; Walker D; Coakley S; Romano D
Brief Bioinform; 2010 May; 11(3):334-47. PubMed ID: 20123941
[TBL] [Abstract][Full Text] [Related]
8. Parallelisation of equation-based simulation programs on heterogeneous computing systems.
Nikolić DD
PeerJ Comput Sci; 2018; 4():e160. PubMed ID: 33816813
[TBL] [Abstract][Full Text] [Related]
9. Taming the complexity of biological pathways through parallel computing.
Ballarini P; Guido R; Mazza T; Prandi D
Brief Bioinform; 2009 May; 10(3):278-88. PubMed ID: 19339382
[TBL] [Abstract][Full Text] [Related]
10. The cloud and other new computational methods to improve molecular modelling.
Korb O; Finn PW; Jones G
Expert Opin Drug Discov; 2014 Oct; 9(10):1121-31. PubMed ID: 25146114
[TBL] [Abstract][Full Text] [Related]
11. Graphics processing units in bioinformatics, computational biology and systems biology.
Nobile MS; Cazzaniga P; Tangherloni A; Besozzi D
Brief Bioinform; 2017 Sep; 18(5):870-885. PubMed ID: 27402792
[TBL] [Abstract][Full Text] [Related]
12. Heterogeneous computing for epidemiological model fitting and simulation.
Kovac T; Haber T; Reeth FV; Hens N
BMC Bioinformatics; 2018 Mar; 19(1):101. PubMed ID: 29548279
[TBL] [Abstract][Full Text] [Related]
13. Massive exploration of perturbed conditions of the blood coagulation cascade through GPU parallelization.
Cazzaniga P; Nobile MS; Besozzi D; Bellini M; Mauri G
Biomed Res Int; 2014; 2014():863298. PubMed ID: 25025072
[TBL] [Abstract][Full Text] [Related]
14. NMF-mGPU: non-negative matrix factorization on multi-GPU systems.
Mejía-Roa E; Tabas-Madrid D; Setoain J; García C; Tirado F; Pascual-Montano A
BMC Bioinformatics; 2015 Feb; 16():43. PubMed ID: 25887585
[TBL] [Abstract][Full Text] [Related]
15. Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms.
Ganesan N; Li J; Sharma V; Jiang H; Compagnoni A
IEEE/ACM Trans Comput Biol Bioinform; 2016; 13(2):365-79. PubMed ID: 27045833
[TBL] [Abstract][Full Text] [Related]
16. Parallelisation strategies for agent based simulation of immune systems.
Kabiri Chimeh M; Heywood P; Pennisi M; Pappalardo F; Richmond P
BMC Bioinformatics; 2019 Dec; 20(Suppl 6):579. PubMed ID: 31823716
[TBL] [Abstract][Full Text] [Related]
17. A toolbox for discrete modelling of cell signalling dynamics.
Paterson YZ; Shorthouse D; Pleijzier MW; Piterman N; Bendtsen C; Hall BA; Fisher J
Integr Biol (Camb); 2018 Jun; 10(6):370-382. PubMed ID: 29855020
[TBL] [Abstract][Full Text] [Related]
18. GPU computing for systems biology.
Dematté L; Prandi D
Brief Bioinform; 2010 May; 11(3):323-33. PubMed ID: 20211843
[TBL] [Abstract][Full Text] [Related]
19. URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.
Drawert B; Engblom S; Hellander A
BMC Syst Biol; 2012 Jun; 6():76. PubMed ID: 22727185
[TBL] [Abstract][Full Text] [Related]
20. Simulation of P systems with active membranes on CUDA.
Cecilia JM; García JM; Guerrero GD; Martínez-del-Amor MA; Pérez-Hurtado I; Pérez-Jiménez MJ
Brief Bioinform; 2010 May; 11(3):313-22. PubMed ID: 20038568
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
