BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

200 related articles for article (PubMed ID: 32315402)

  • 1. yacrd and fpa: upstream tools for long-read genome assembly.
    Marijon P; Chikhi R; Varré JS
    Bioinformatics; 2020 Jun; 36(12):3894-3896. PubMed ID: 32315402
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NextPolish: a fast and efficient genome polishing tool for long-read assembly.
    Hu J; Fan J; Sun Z; Liu S
    Bioinformatics; 2020 Apr; 36(7):2253-2255. PubMed ID: 31778144
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RepLong: de novo repeat identification using long read sequencing data.
    Guo R; Li YR; He S; Ou-Yang L; Sun Y; Zhu Z
    Bioinformatics; 2018 Apr; 34(7):1099-1107. PubMed ID: 29126180
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ARCS: scaffolding genome drafts with linked reads.
    Yeo S; Coombe L; Warren RL; Chu J; Birol I
    Bioinformatics; 2018 Mar; 34(5):725-731. PubMed ID: 29069293
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.
    Recanati A; Brüls T; d'Aspremont A
    Bioinformatics; 2017 Oct; 33(20):3188-3194. PubMed ID: 28605450
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identifying and removing haplotypic duplication in primary genome assemblies.
    Guan D; McCarthy SA; Wood J; Howe K; Wang Y; Durbin R
    Bioinformatics; 2020 May; 36(9):2896-2898. PubMed ID: 31971576
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm.
    Firtina C; Kim JS; Alser M; Senol Cali D; Cicek AE; Alkan C; Mutlu O
    Bioinformatics; 2020 Jun; 36(12):3669-3679. PubMed ID: 32167530
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ARBitR: an overlap-aware genome assembly scaffolder for linked reads.
    Hiltunen M; Ryberg M; Johannesson H
    Bioinformatics; 2021 Aug; 37(15):2203-2205. PubMed ID: 33216122
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TandemTools: mapping long reads and assessing/improving assembly quality in extra-long tandem repeats.
    Mikheenko A; Bzikadze AV; Gurevich A; Miga KH; Pevzner PA
    Bioinformatics; 2020 Jul; 36(Suppl_1):i75-i83. PubMed ID: 32657355
    [TBL] [Abstract][Full Text] [Related]  

  • 10. FLAS: fast and high-throughput algorithm for PacBio long-read self-correction.
    Bao E; Xie F; Song C; Song D
    Bioinformatics; 2019 Oct; 35(20):3953-3960. PubMed ID: 30895306
    [TBL] [Abstract][Full Text] [Related]  

  • 11. MsPAC: a tool for haplotype-phased structural variant detection.
    Rodriguez OL; Ritz A; Sharp AJ; Bashir A
    Bioinformatics; 2020 Feb; 36(3):922-924. PubMed ID: 31397844
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Minimap2: pairwise alignment for nucleotide sequences.
    Li H
    Bioinformatics; 2018 Sep; 34(18):3094-3100. PubMed ID: 29750242
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.
    Dai H; Guan Y
    Bioinformatics; 2020 May; 36(10):3254-3256. PubMed ID: 32091581
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies.
    Yang LA; Chang YJ; Chen SH; Lin CY; Ho JM
    BMC Genomics; 2019 Apr; 19(Suppl 9):238. PubMed ID: 30999844
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prowler: a novel trimming algorithm for Oxford Nanopore sequence data.
    Lee S; Nguyen LT; Hayes BJ; Ross EM
    Bioinformatics; 2021 Nov; 37(21):3936-3937. PubMed ID: 34473226
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.
    Li H
    Bioinformatics; 2016 Jul; 32(14):2103-10. PubMed ID: 27153593
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evaluation of tools for long read RNA-seq splice-aware alignment.
    Križanovic K; Echchiki A; Roux J; Šikic M
    Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
    [TBL] [Abstract][Full Text] [Related]  

  • 19. PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.
    Ono Y; Asai K; Hamada M
    Bioinformatics; 2021 May; 37(5):589-595. PubMed ID: 32976553
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.