496 related articles for article (PubMed ID: 32321567)
1. ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation.
Reske JJ; Wilson MR; Chandler RL
Epigenetics Chromatin; 2020 Apr; 13(1):22. PubMed ID: 32321567
[TBL] [Abstract][Full Text] [Related]
2. Analytical Approaches for ATAC-seq Data Analysis.
Smith JP; Sheffield NC
Curr Protoc Hum Genet; 2020 Jun; 106(1):e101. PubMed ID: 32543102
[TBL] [Abstract][Full Text] [Related]
3. CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
Qiu X; Feit AS; Feiglin A; Xie Y; Kesten N; Taing L; Perkins J; Gu S; Li Y; Cejas P; Zhou N; Jeselsohn R; Brown M; Shirley Liu X; Long HW
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):652-661. PubMed ID: 34284136
[TBL] [Abstract][Full Text] [Related]
4. Genome-Wide Analysis of Yeast Metabolic Cycle through Metabolic Network Models Reveals Superiority of Integrated ATAC-seq Data over RNA-seq Data.
Cesur MF; Çakır T; Pir P
mSystems; 2022 Jun; 7(3):e0134721. PubMed ID: 35695574
[TBL] [Abstract][Full Text] [Related]
5. ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq.
Lu RJ; Liu YT; Huang CW; Yen MR; Lin CY; Chen PY
Front Genet; 2020; 11():618478. PubMed ID: 33584814
[TBL] [Abstract][Full Text] [Related]
6. Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects.
Van den Berge K; Chou HJ; Roux de Bézieux H; Street K; Risso D; Ngai J; Dudoit S
Cell Rep Methods; 2022 Nov; 2(11):100321. PubMed ID: 36452861
[TBL] [Abstract][Full Text] [Related]
7. Comparison of differential accessibility analysis strategies for ATAC-seq data.
Gontarz P; Fu S; Xing X; Liu S; Miao B; Bazylianska V; Sharma A; Madden P; Cates K; Yoo A; Moszczynska A; Wang T; Zhang B
Sci Rep; 2020 Jun; 10(1):10150. PubMed ID: 32576878
[TBL] [Abstract][Full Text] [Related]
8. ATAC-DEA: A Web-Based ATAC-Seq Data Differential Peak and Annotation Analysis Application.
Zhang S; Wang S
J Comput Biol; 2023 Mar; 30(3):337-345. PubMed ID: 36656543
[TBL] [Abstract][Full Text] [Related]
9. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
[TBL] [Abstract][Full Text] [Related]
10. XL-DNase-seq: improved footprinting of dynamic transcription factors.
Oh KS; Ha J; Baek S; Sung MH
Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
[TBL] [Abstract][Full Text] [Related]
11. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
12. From reads to insight: a hitchhiker's guide to ATAC-seq data analysis.
Yan F; Powell DR; Curtis DJ; Wong NC
Genome Biol; 2020 Feb; 21(1):22. PubMed ID: 32014034
[TBL] [Abstract][Full Text] [Related]
13. RoboCOP: jointly computing chromatin occupancy profiles for numerous factors from chromatin accessibility data.
Mitra S; Zhong J; Tran TQ; MacAlpine DM; Hartemink AJ
Nucleic Acids Res; 2021 Aug; 49(14):7925-7938. PubMed ID: 34255854
[TBL] [Abstract][Full Text] [Related]
14. [ATAC-seq and its applications in complex disease].
Chen M; Zhang Z; Meng ZY; Zhang XJ
Yi Chuan; 2020 Apr; 42(4):347-353. PubMed ID: 32312703
[TBL] [Abstract][Full Text] [Related]
15. Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data.
Nordström KJV; Schmidt F; Gasparoni N; Salhab A; Gasparoni G; Kattler K; Müller F; Ebert P; Costa IG; ; Pfeifer N; Lengauer T; Schulz MH; Walter J
Nucleic Acids Res; 2019 Nov; 47(20):10580-10596. PubMed ID: 31584093
[TBL] [Abstract][Full Text] [Related]
16. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
Marinov GK; Shipony Z
Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
[TBL] [Abstract][Full Text] [Related]
17. Chromatin Accessibility Profiling and Data Analysis Using ATAC-seq in
Reeves GA; Singh PP; Brunet A
Cold Spring Harb Protoc; 2024 Mar; 2024(3):107747. PubMed ID: 37100469
[TBL] [Abstract][Full Text] [Related]
18. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
Huang L; Li X; Dong L; Wang B; Pan L
BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
[TBL] [Abstract][Full Text] [Related]
19. Quantification, Dynamic Visualization, and Validation of Bias in ATAC-Seq Data with ataqv.
Orchard P; Kyono Y; Hensley J; Kitzman JO; Parker SCJ
Cell Syst; 2020 Mar; 10(3):298-306.e4. PubMed ID: 32213349
[TBL] [Abstract][Full Text] [Related]
20. AIAP: A Quality Control and Integrative Analysis Package to Improve ATAC-seq Data Analysis.
Liu S; Li D; Lyu C; Gontarz PM; Miao B; Madden PAF; Wang T; Zhang B
Genomics Proteomics Bioinformatics; 2021 Aug; 19(4):641-651. PubMed ID: 34273560
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
