255 related articles for article (PubMed ID: 32325877)
1. Multiscale Molecular Modeling in G Protein-Coupled Receptor (GPCR)-Ligand Studies.
Nakliang P; Lazim R; Chang H; Choi S
Biomolecules; 2020 Apr; 10(4):. PubMed ID: 32325877
[TBL] [Abstract][Full Text] [Related]
2. Efficiency of Homology Modeling Assisted Molecular Docking in G-protein Coupled Receptors.
Bhunia SS; Saxena AK
Curr Top Med Chem; 2021; 21(4):269-294. PubMed ID: 32901584
[TBL] [Abstract][Full Text] [Related]
3. Analyzing GPCR-Ligand Interactions with the Fragment Molecular Orbital (FMO) Method.
Heifetz A; James T; Southey M; Morao I; Fedorov DG; Bodkin MJ; Townsend-Nicholson A
Methods Mol Biol; 2020; 2114():163-175. PubMed ID: 32016893
[TBL] [Abstract][Full Text] [Related]
4. Class A GPCRs: Structure, Function, Modeling and Structure-based Ligand Design.
Cong X; Topin J; Golebiowski J
Curr Pharm Des; 2017 Nov; 23(29):4390-4409. PubMed ID: 28699533
[TBL] [Abstract][Full Text] [Related]
5. Improving virtual screening of G protein-coupled receptors via ligand-directed modeling.
Coudrat T; Simms J; Christopoulos A; Wootten D; Sexton PM
PLoS Comput Biol; 2017 Nov; 13(11):e1005819. PubMed ID: 29131821
[TBL] [Abstract][Full Text] [Related]
6. Current status of multiscale simulations on GPCRs.
Durdagi S; Dogan B; Erol I; Kayık G; Aksoydan B
Curr Opin Struct Biol; 2019 Apr; 55():93-103. PubMed ID: 31082696
[TBL] [Abstract][Full Text] [Related]
7. Reliability of Docking-Based Virtual Screening for GPCR Ligands with Homology Modeled Structures: A Case Study of the Angiotensin II Type I Receptor.
Chen H; Fu W; Wang Z; Wang X; Lei T; Zhu F; Li D; Chang S; Xu L; Hou T
ACS Chem Neurosci; 2019 Jan; 10(1):677-689. PubMed ID: 30265513
[TBL] [Abstract][Full Text] [Related]
8. Benchmarking GPCR homology model template selection in combination with de novo loop generation.
Szwabowski GL; Castleman PN; Sears CK; Wink LH; Cole JA; Baker DL; Parrill AL
J Comput Aided Mol Des; 2020 Oct; 34(10):1027-1044. PubMed ID: 32737667
[TBL] [Abstract][Full Text] [Related]
9. X-ray structure breakthroughs in the GPCR transmembrane region.
Topiol S; Sabio M
Biochem Pharmacol; 2009 Jul; 78(1):11-20. PubMed ID: 19447219
[TBL] [Abstract][Full Text] [Related]
10. Application of Multiscale Simulation Tools on GPCRs. An Example with Angiotensin II Type 1 Receptor.
Erol I; Aksoydan B; Kantarcioglu I; Durdagi S
Methods Mol Biol; 2018; 1824():431-448. PubMed ID: 30039423
[TBL] [Abstract][Full Text] [Related]
11. Computational modeling of structure-function of g protein-coupled receptors with applications for drug design.
Li YY; Hou TJ; Goddard WA
Curr Med Chem; 2010; 17(12):1167-80. PubMed ID: 20158474
[TBL] [Abstract][Full Text] [Related]
12. Agonist-induced conformational changes in bovine rhodopsin: insight into activation of G-protein-coupled receptors.
Bhattacharya S; Hall SE; Vaidehi N
J Mol Biol; 2008 Oct; 382(2):539-55. PubMed ID: 18638482
[TBL] [Abstract][Full Text] [Related]
13. Characterizing Rhodopsin-Arrestin Interactions with the Fragment Molecular Orbital (FMO) Method.
Heifetz A; Townsend-Nicholson A
Methods Mol Biol; 2020; 2114():177-186. PubMed ID: 32016894
[TBL] [Abstract][Full Text] [Related]
14. Structure versus function-The impact of computational methods on the discovery of specific GPCR-ligands.
Bermudez M; Wolber G
Bioorg Med Chem; 2015 Jul; 23(14):3907-12. PubMed ID: 25828056
[TBL] [Abstract][Full Text] [Related]
15. Rational Design of Drugs Targeting G-Protein-Coupled Receptors: Ligand Search and Screening.
Luginina AP; Khnykin AN; Khorn PA; Moiseeva OV; Safronova NA; Pospelov VA; Dashevskii DE; Belousov AS; Borschevskiy VI; Mishin AV
Biochemistry (Mosc); 2024 May; 89(5):958-972. PubMed ID: 38880655
[TBL] [Abstract][Full Text] [Related]
16. Galaxy7TM: flexible GPCR-ligand docking by structure refinement.
Lee GR; Seok C
Nucleic Acids Res; 2016 Jul; 44(W1):W502-6. PubMed ID: 27131365
[TBL] [Abstract][Full Text] [Related]
17. Importance of protein dynamics in the structure-based drug discovery of class A G protein-coupled receptors (GPCRs).
Lee Y; Lazim R; Macalino SJY; Choi S
Curr Opin Struct Biol; 2019 Apr; 55():147-153. PubMed ID: 31102980
[TBL] [Abstract][Full Text] [Related]
18. Exploring GPCR-Ligand Interactions with the Fragment Molecular Orbital (FMO) Method.
Chudyk EI; Sarrat L; Aldeghi M; Fedorov DG; Bodkin MJ; James T; Southey M; Robinson R; Morao I; Heifetz A
Methods Mol Biol; 2018; 1705():179-195. PubMed ID: 29188563
[TBL] [Abstract][Full Text] [Related]
19. New Trends in Inspecting GPCR-ligand Recognition Process: the Contribution of the Molecular Modeling Section (MMS) at the University of Padova.
Ciancetta A; Cuzzolin A; Deganutti G; Sturlese M; Salmaso V; Cristiani A; Sabbadin D; Moro S
Mol Inform; 2016 Sep; 35(8-9):440-8. PubMed ID: 27546048
[TBL] [Abstract][Full Text] [Related]
20. Self-docking and cross-docking simulations of G protein-coupled receptor-ligand complexes: Impact of ligand type and receptor activation state.
Thomas BN; Parrill AL; Baker DL
J Mol Graph Model; 2022 May; 112():108119. PubMed ID: 34979368
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]