These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
117 related articles for article (PubMed ID: 32334526)
21. SCell: integrated analysis of single-cell RNA-seq data. Diaz A; Liu SJ; Sandoval C; Pollen A; Nowakowski TJ; Lim DA; Kriegstein A Bioinformatics; 2016 Jul; 32(14):2219-20. PubMed ID: 27153637 [TBL] [Abstract][Full Text] [Related]
22. CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones. Müller S; Cho A; Liu SJ; Lim DA; Diaz A Bioinformatics; 2018 Sep; 34(18):3217-3219. PubMed ID: 29897414 [TBL] [Abstract][Full Text] [Related]
23. Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data. Chen S; Zhou Y; Chen Y; Huang T; Liao W; Xu Y; Li Z; Gu J BMC Bioinformatics; 2019 Dec; 20(Suppl 23):606. PubMed ID: 31881822 [TBL] [Abstract][Full Text] [Related]
24. TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis. Ji Z; Ji H Nucleic Acids Res; 2016 Jul; 44(13):e117. PubMed ID: 27179027 [TBL] [Abstract][Full Text] [Related]
25. DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data. Gaspar JM; Hart RP BMC Bioinformatics; 2017 Nov; 18(1):528. PubMed ID: 29187143 [TBL] [Abstract][Full Text] [Related]
26. FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets. Ko ME; Williams CM; Fread KI; Goggin SM; Rustagi RS; Fragiadakis GK; Nolan GP; Zunder ER Nat Protoc; 2020 Feb; 15(2):398-420. PubMed ID: 31932774 [TBL] [Abstract][Full Text] [Related]
28. ImagePy: an open-source, Python-based and platform-independent software package for bioimage analysis. Wang A; Yan X; Wei Z Bioinformatics; 2018 Sep; 34(18):3238-3240. PubMed ID: 29718132 [TBL] [Abstract][Full Text] [Related]
29. Cloud accelerated alignment and assembly of full-length single-cell RNA-seq data using Falco. Yang A; Kishore A; Phipps B; Ho JWK BMC Genomics; 2019 Dec; 20(Suppl 10):927. PubMed ID: 31888474 [TBL] [Abstract][Full Text] [Related]
30. 3'Pool-seq: an optimized cost-efficient and scalable method of whole-transcriptome gene expression profiling. Sholder G; Lanz TA; Moccia R; Quan J; Aparicio-Prat E; Stanton R; Xi HS BMC Genomics; 2020 Jan; 21(1):64. PubMed ID: 31959126 [TBL] [Abstract][Full Text] [Related]
31. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences. Avvaru AK; Sowpati DT; Mishra RK Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165 [TBL] [Abstract][Full Text] [Related]
32. Fast ancestral gene order reconstruction of genomes with unequal gene content. Feijão P; Araujo E BMC Bioinformatics; 2016 Nov; 17(Suppl 14):413. PubMed ID: 28185578 [TBL] [Abstract][Full Text] [Related]
33. VPAC: Variational projection for accurate clustering of single-cell transcriptomic data. Chen S; Hua K; Cui H; Jiang R BMC Bioinformatics; 2019 May; 20(Suppl 7):0. PubMed ID: 31074382 [TBL] [Abstract][Full Text] [Related]
35. Methods and tools for spatial mapping of single-cell RNAseq clusters in Drosophila. Mohr SE; Tattikota SG; Xu J; Zirin J; Hu Y; Perrimon N Genetics; 2021 Apr; 217(4):. PubMed ID: 33713129 [TBL] [Abstract][Full Text] [Related]
36. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud. Yang A; Troup M; Lin P; Ho JW Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200 [TBL] [Abstract][Full Text] [Related]
37. TeraPCA: a fast and scalable software package to study genetic variation in tera-scale genotypes. Bose A; Kalantzis V; Kontopoulou EM; Elkady M; Paschou P; Drineas P Bioinformatics; 2019 Oct; 35(19):3679-3683. PubMed ID: 30957838 [TBL] [Abstract][Full Text] [Related]
38. ddSeeker: a tool for processing Bio-Rad ddSEQ single cell RNA-seq data. Romagnoli D; Boccalini G; Bonechi M; Biagioni C; Fassan P; Bertorelli R; De Sanctis V; Di Leo A; Migliaccio I; Malorni L; Benelli M BMC Genomics; 2018 Dec; 19(1):960. PubMed ID: 30583719 [TBL] [Abstract][Full Text] [Related]
39. PyPDB: a Python API for the Protein Data Bank. Gilpin W Bioinformatics; 2016 Jan; 32(1):159-60. PubMed ID: 26369703 [TBL] [Abstract][Full Text] [Related]