177 related articles for article (PubMed ID: 32353042)
1. Combining signal and sequence to detect RNA polymerase initiation in ATAC-seq data.
Tripodi IJ; Chowdhury M; Gruca M; Dowell RD
PLoS One; 2020; 15(4):e0232332. PubMed ID: 32353042
[TBL] [Abstract][Full Text] [Related]
2. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.
Lu Z; Hofmeister BT; Vollmers C; DuBois RM; Schmitz RJ
Nucleic Acids Res; 2017 Apr; 45(6):e41. PubMed ID: 27903897
[TBL] [Abstract][Full Text] [Related]
3. [Advances in assay for transposase-accessible chromatin with high-throughput sequencing].
Wu J; Quan JP; Ye Y; Wu ZF; Yang J; Yang M; Zheng EQ
Yi Chuan; 2020 Apr; 42(4):333-346. PubMed ID: 32312702
[TBL] [Abstract][Full Text] [Related]
4. Mapping Genome-wide Accessible Chromatin in Primary Human T Lymphocytes by ATAC-Seq.
Grbesa I; Tannenbaum M; Sarusi-Portuguez A; Schwartz M; Hakim O
J Vis Exp; 2017 Nov; (129):. PubMed ID: 29155775
[TBL] [Abstract][Full Text] [Related]
5. Identification of Open Chromatin Regions in Plant Genomes Using ATAC-Seq.
Bajic M; Maher KA; Deal RB
Methods Mol Biol; 2018; 1675():183-201. PubMed ID: 29052193
[TBL] [Abstract][Full Text] [Related]
6. Transcription Restart Establishes Chromatin Accessibility after DNA Replication.
Stewart-Morgan KR; Reverón-Gómez N; Groth A
Mol Cell; 2019 Jul; 75(2):284-297.e6. PubMed ID: 31126739
[TBL] [Abstract][Full Text] [Related]
7. Detecting Differential Transcription Factor Activity from ATAC-Seq Data.
Tripodi IJ; Allen MA; Dowell RD
Molecules; 2018 May; 23(5):. PubMed ID: 29748466
[TBL] [Abstract][Full Text] [Related]
8. Interrogating the Accessible Chromatin Landscape of Eukaryote Genomes Using ATAC-seq.
Marinov GK; Shipony Z
Methods Mol Biol; 2021; 2243():183-226. PubMed ID: 33606259
[TBL] [Abstract][Full Text] [Related]
9. Detect accessible chromatin using ATAC-sequencing, from principle to applications.
Sun Y; Miao N; Sun T
Hereditas; 2019; 156():29. PubMed ID: 31427911
[TBL] [Abstract][Full Text] [Related]
10. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
Cazares TA; Rizvi FW; Iyer B; Chen X; Kotliar M; Bejjani AT; Wayman JA; Donmez O; Wronowski B; Parameswaran S; Kottyan LC; Barski A; Weirauch MT; Prasath VBS; Miraldi ER
PLoS Comput Biol; 2023 Jan; 19(1):e1010863. PubMed ID: 36719906
[TBL] [Abstract][Full Text] [Related]
11. ATAC-seq with unique molecular identifiers improves quantification and footprinting.
Zhu T; Liao K; Zhou R; Xia C; Xie W
Commun Biol; 2020 Nov; 3(1):675. PubMed ID: 33188264
[TBL] [Abstract][Full Text] [Related]
12. ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data.
Ou J; Liu H; Yu J; Kelliher MA; Castilla LH; Lawson ND; Zhu LJ
BMC Genomics; 2018 Mar; 19(1):169. PubMed ID: 29490630
[TBL] [Abstract][Full Text] [Related]
13. methyl-ATAC-seq measures DNA methylation at accessible chromatin.
Spektor R; Tippens ND; Mimoso CA; Soloway PD
Genome Res; 2019 Jun; 29(6):969-977. PubMed ID: 31160376
[TBL] [Abstract][Full Text] [Related]
14. XL-DNase-seq: improved footprinting of dynamic transcription factors.
Oh KS; Ha J; Baek S; Sung MH
Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
[TBL] [Abstract][Full Text] [Related]
15. ATAC-seq Optimization for Cancer Epigenetics Research.
Cooper M; Ray A; Bhattacharya A; Dhasarathy A; Takaku M
J Vis Exp; 2022 Jun; (184):. PubMed ID: 35848835
[TBL] [Abstract][Full Text] [Related]
16. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
Huang L; Li X; Dong L; Wang B; Pan L
BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
[TBL] [Abstract][Full Text] [Related]
17. Assay for Transposase-Accessible Chromatin with High-Throughput Sequencing (ATAC-Seq) Protocol for Zebrafish Embryos.
Doganli C; Sandoval M; Thomas S; Hart D
Methods Mol Biol; 2017; 1507():59-66. PubMed ID: 27832532
[TBL] [Abstract][Full Text] [Related]
18. Identification of transcription factor binding sites using ATAC-seq.
Li Z; Schulz MH; Look T; Begemann M; Zenke M; Costa IG
Genome Biol; 2019 Feb; 20(1):45. PubMed ID: 30808370
[TBL] [Abstract][Full Text] [Related]
19. Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum.
Ruiz JL; Tena JJ; Bancells C; Cortés A; Gómez-Skarmeta JL; Gómez-Díaz E
Nucleic Acids Res; 2018 Oct; 46(18):9414-9431. PubMed ID: 30016465
[TBL] [Abstract][Full Text] [Related]
20. Chromatin accessibility profiling by ATAC-seq.
Grandi FC; Modi H; Kampman L; Corces MR
Nat Protoc; 2022 Jun; 17(6):1518-1552. PubMed ID: 35478247
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
