238 related articles for article (PubMed ID: 32369554)
1. HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C.
Nakabayashi R; Morishita S
Bioinformatics; 2020 Jul; 36(13):3966-3974. PubMed ID: 32369554
[TBL] [Abstract][Full Text] [Related]
2. Improvement of the Threespine Stickleback Genome Using a Hi-C-Based Proximity-Guided Assembly.
Peichel CL; Sullivan ST; Liachko I; White MA
J Hered; 2017 Sep; 108(6):693-700. PubMed ID: 28821183
[TBL] [Abstract][Full Text] [Related]
3. EndHiC: assemble large contigs into chromosome-level scaffolds using the Hi-C links from contig ends.
Wang S; Wang H; Jiang F; Wang A; Liu H; Zhao H; Yang B; Xu D; Zhang Y; Fan W
BMC Bioinformatics; 2022 Dec; 23(1):528. PubMed ID: 36482318
[TBL] [Abstract][Full Text] [Related]
4. Efficient iterative Hi-C scaffolder based on N-best neighbors.
Guan D; McCarthy SA; Ning Z; Wang G; Wang Y; Durbin R
BMC Bioinformatics; 2021 Nov; 22(1):569. PubMed ID: 34837944
[TBL] [Abstract][Full Text] [Related]
5. Scaffolding pre-assembled contigs using SSPACE.
Boetzer M; Henkel CV; Jansen HJ; Butler D; Pirovano W
Bioinformatics; 2011 Feb; 27(4):578-9. PubMed ID: 21149342
[TBL] [Abstract][Full Text] [Related]
6. Scaffolding of long read assemblies using long range contact information.
Ghurye J; Pop M; Koren S; Bickhart D; Chin CS
BMC Genomics; 2017 Jul; 18(1):527. PubMed ID: 28701198
[TBL] [Abstract][Full Text] [Related]
7. Improved gap size estimation for scaffolding algorithms.
Sahlin K; Street N; Lundeberg J; Arvestad L
Bioinformatics; 2012 Sep; 28(17):2215-22. PubMed ID: 22923455
[TBL] [Abstract][Full Text] [Related]
8. RegScaf: a regression approach to scaffolding.
Li M; Li LM
Bioinformatics; 2022 May; 38(10):2675-2682. PubMed ID: 35561180
[TBL] [Abstract][Full Text] [Related]
9. Boost-HiC: computational enhancement of long-range contacts in chromosomal contact maps.
Carron L; Morlot JB; Matthys V; Lesne A; Mozziconacci J
Bioinformatics; 2019 Aug; 35(16):2724-2729. PubMed ID: 30615061
[TBL] [Abstract][Full Text] [Related]
10. SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing.
Dohm JC; Lottaz C; Borodina T; Himmelbauer H
Genome Res; 2007 Nov; 17(11):1697-706. PubMed ID: 17908823
[TBL] [Abstract][Full Text] [Related]
11. Comparison of Hi-C-Based Scaffolding Tools on Plant Genomes.
Hou Y; Wang L; Pan W
Genes (Basel); 2023 Nov; 14(12):. PubMed ID: 38136968
[TBL] [Abstract][Full Text] [Related]
12. AlignGraph2: similar genome-assisted reassembly pipeline for PacBio long reads.
Huang S; He X; Wang G; Bao E
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33621981
[TBL] [Abstract][Full Text] [Related]
13. FastEtch: A Fast Sketch-Based Assembler for Genomes.
Ghosh P; Kalyanaraman A
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
[TBL] [Abstract][Full Text] [Related]
14. HALC: High throughput algorithm for long read error correction.
Bao E; Lan L
BMC Bioinformatics; 2017 Apr; 18(1):204. PubMed ID: 28381259
[TBL] [Abstract][Full Text] [Related]
15. Index suffix-prefix overlaps by (w, k)-minimizer to generate long contigs for reads compression.
Liu Y; Yu Z; Dinger ME; Li J
Bioinformatics; 2019 Jun; 35(12):2066-2074. PubMed ID: 30407482
[TBL] [Abstract][Full Text] [Related]
16. COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly.
Liu B; Yuan J; Yiu SM; Li Z; Xie Y; Chen Y; Shi Y; Zhang H; Li Y; Lam TW; Luo R
Bioinformatics; 2012 Nov; 28(22):2870-4. PubMed ID: 23044551
[TBL] [Abstract][Full Text] [Related]
17. CSAR: a contig scaffolding tool using algebraic rearrangements.
Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
[TBL] [Abstract][Full Text] [Related]
18. CAR: contig assembly of prokaryotic draft genomes using rearrangements.
Lu CL; Chen KT; Huang SY; Chiu HT
BMC Bioinformatics; 2014 Nov; 15(1):381. PubMed ID: 25431302
[TBL] [Abstract][Full Text] [Related]
19. An efficient algorithm for the contig ordering problem under algebraic rearrangement distance.
Lu CL
J Comput Biol; 2015 Nov; 22(11):975-87. PubMed ID: 26247343
[TBL] [Abstract][Full Text] [Related]
20. Assembling contigs in draft genomes using reversals and block-interchanges.
Li CL; Chen KT; Lu CL
BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S9. PubMed ID: 23734866
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
