These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
188 related articles for article (PubMed ID: 32376847)
1. Rapid identification of pathogens, antibiotic resistance genes and plasmids in blood cultures by nanopore sequencing. Taxt AM; Avershina E; Frye SA; Naseer U; Ahmad R Sci Rep; 2020 May; 10(1):7622. PubMed ID: 32376847 [TBL] [Abstract][Full Text] [Related]
2. Metagenomic identification of pathogens and antimicrobial-resistant genes in bacterial positive blood cultures by nanopore sequencing. Liu Y; Xu Y; Xu X; Chen X; Chen H; Zhang J; Ma J; Zhang W; Zhang R; Chen J Front Cell Infect Microbiol; 2023; 13():1283094. PubMed ID: 38192400 [TBL] [Abstract][Full Text] [Related]
3. Rapid nanopore sequencing and predictive susceptibility testing of positive blood cultures from intensive care patients with sepsis. Harris PNA; Bauer MJ; Lüftinger L; Beisken S; Forde BM; Balch R; Cotta M; Schlapbach L; Raman S; Shekar K; Kruger P; Lipman J; Bialasiewicz S; Coin L; Roberts JA; Paterson DL; Irwin AD Microbiol Spectr; 2024 Feb; 12(2):e0306523. PubMed ID: 38193658 [TBL] [Abstract][Full Text] [Related]
4. Suppression PCR-Based Selective Enrichment Sequencing for Pathogen and Antimicrobial Resistance Detection on Cell-Free DNA in Sepsis-A Targeted, Blood Culture-Independent Approach for Rapid Pathogen and Resistance Diagnostics in Septic Patients. Sonntag M; Elgeti VK; Vainshtein Y; Jenner L; Mueller J; Brenner T; Decker SO; Sohn K Int J Mol Sci; 2024 May; 25(10):. PubMed ID: 38791501 [TBL] [Abstract][Full Text] [Related]
5. Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology. Taylor TL; Volkening JD; DeJesus E; Simmons M; Dimitrov KM; Tillman GE; Suarez DL; Afonso CL Sci Rep; 2019 Nov; 9(1):16350. PubMed ID: 31704961 [TBL] [Abstract][Full Text] [Related]
6. Rapid Detection of Genetic Engineering, Structural Variation, and Antimicrobial Resistance Markers in Bacterial Biothreat Pathogens by Nanopore Sequencing. Gargis AS; Cherney B; Conley AB; McLaughlin HP; Sue D Sci Rep; 2019 Sep; 9(1):13501. PubMed ID: 31534162 [TBL] [Abstract][Full Text] [Related]
7. Comprehensive genomic and plasmid characterization of multidrug-resistant bacterial strains by R10.4.1 nanopore sequencing. Ye L; Liu X; Ni Y; Xu Y; Zheng Z; Chen K; Hu Q; Tan L; Guo Z; Wai CK; Chan EWC; Li R; Chen S Microbiol Res; 2024 Jun; 283():127666. PubMed ID: 38460283 [TBL] [Abstract][Full Text] [Related]
8. Optimizing Nanopore Sequencing for Rapid Detection of Microbial Species and Antimicrobial Resistance in Patients at Risk of Surgical Site Infections. Whittle E; Yonkus JA; Jeraldo P; Alva-Ruiz R; Nelson H; Kendrick ML; Grys TE; Patel R; Truty MJ; Chia N mSphere; 2022 Feb; 7(1):e0096421. PubMed ID: 35171692 [TBL] [Abstract][Full Text] [Related]
9. Molecular rapid diagnostic testing for bloodstream infections: Nanopore targeted sequencing with pathogen-specific primers. Han D; Yu F; Zhang D; Hu J; Zhang X; Xiang D; Lou B; Chen Y; Zheng S J Infect; 2024 Jun; 88(6):106166. PubMed ID: 38670268 [TBL] [Abstract][Full Text] [Related]
10. Rapid identification of pathogens from positive blood culture bottles with the MinION nanopore sequencer. Ashikawa S; Tarumoto N; Imai K; Sakai J; Kodana M; Kawamura T; Ikebuchi K; Murakami T; Mitsutake K; Maesaki S; Maeda T J Med Microbiol; 2018 Nov; 67(11):1589-1595. PubMed ID: 30311873 [TBL] [Abstract][Full Text] [Related]
11. Nanopore sequencing for fast determination of plasmids, phages, virulence markers, and antimicrobial resistance genes in Shiga toxin-producing Escherichia coli. González-Escalona N; Allard MA; Brown EW; Sharma S; Hoffmann M PLoS One; 2019; 14(7):e0220494. PubMed ID: 31361781 [TBL] [Abstract][Full Text] [Related]
12. Diverse Commensal Escherichia coli Clones and Plasmids Disseminate Antimicrobial Resistance Genes in Domestic Animals and Children in a Semirural Community in Ecuador. Salinas L; Cárdenas P; Johnson TJ; Vasco K; Graham J; Trueba G mSphere; 2019 May; 4(3):. PubMed ID: 31118304 [TBL] [Abstract][Full Text] [Related]
13. Origin, maintenance and spread of antibiotic resistance genes within plasmids and chromosomes of bloodstream isolates of Goswami C; Fox S; Holden MTG; Connor M; Leanord A; Evans TJ Microb Genom; 2020 Apr; 6(4):. PubMed ID: 32160146 [TBL] [Abstract][Full Text] [Related]
14. Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Juraschek K; Borowiak M; Tausch SH; Malorny B; Käsbohrer A; Otani S; Schwarz S; Meemken D; Deneke C; Hammerl JA Microorganisms; 2021 Mar; 9(3):. PubMed ID: 33799479 [TBL] [Abstract][Full Text] [Related]
15. Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull ( Cummins ML; Sanderson-Smith M; Newton P; Carlile N; Phalen DN; Maute K; Monahan LG; Hoye BJ; Djordjevic SP mSphere; 2020 Nov; 5(6):. PubMed ID: 33239365 [TBL] [Abstract][Full Text] [Related]
16. Short turnaround time of seven to nine hours from sample collection until informed decision for sepsis treatment using nanopore sequencing. Ali J; Johansen W; Ahmad R Sci Rep; 2024 Mar; 14(1):6534. PubMed ID: 38503770 [TBL] [Abstract][Full Text] [Related]
17. Genomic Epidemiological Analysis of Antimicrobial-Resistant Bacteria with Nanopore Sequencing. Suzuki M; Hashimoto Y; Hirabayashi A; Yahara K; Yoshida M; Fukano H; Hoshino Y; Shibayama K; Tomita H Methods Mol Biol; 2023; 2632():227-246. PubMed ID: 36781732 [TBL] [Abstract][Full Text] [Related]
18. Novel chromosomal insertions of ISEcp1-bla Shawa M; Furuta Y; Mulenga G; Mubanga M; Mulenga E; Zorigt T; Kaile C; Simbotwe M; Paudel A; Hang'ombe B; Higashi H Antimicrob Resist Infect Control; 2021 May; 10(1):79. PubMed ID: 33971966 [TBL] [Abstract][Full Text] [Related]