303 related articles for article (PubMed ID: 32381044)
21. GO4genome: a prokaryotic phylogeny based on genome organization.
Merkl R; Wiezer A
J Mol Evol; 2009 May; 68(5):550-62. PubMed ID: 19436929
[TBL] [Abstract][Full Text] [Related]
22. Reconstruction of ancestral gene orders using intermediate genomes.
Feijão P
BMC Bioinformatics; 2015; 16 Suppl 14(Suppl 14):S3. PubMed ID: 26451811
[TBL] [Abstract][Full Text] [Related]
23. Fast likelihood calculation for multivariate Gaussian phylogenetic models with shifts.
Mitov V; Bartoszek K; Asimomitis G; Stadler T
Theor Popul Biol; 2020 Feb; 131():66-78. PubMed ID: 31805292
[TBL] [Abstract][Full Text] [Related]
24. PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance.
Deng R; Huang M; Wang J; Huang Y; Yang J; Feng J; Wang X
Comput Biol Chem; 2006 Aug; 30(4):300-2. PubMed ID: 16797236
[TBL] [Abstract][Full Text] [Related]
25. constNJ: an algorithm to reconstruct sets of phylogenetic trees satisfying pairwise topological constraints.
Matsen FA
J Comput Biol; 2010 Jun; 17(6):799-818. PubMed ID: 20500096
[TBL] [Abstract][Full Text] [Related]
26. Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.
Katoh K; Kuma K; Miyata T
J Mol Evol; 2001; 53(4-5):477-84. PubMed ID: 11675608
[TBL] [Abstract][Full Text] [Related]
27. On the Accuracy of Ancestral Sequence Reconstruction for Ultrametric Trees with Parsimony.
Herbst L; Fischer M
Bull Math Biol; 2018 Apr; 80(4):864-879. PubMed ID: 29476399
[TBL] [Abstract][Full Text] [Related]
28. PhyPA: Phylogenetic method with pairwise sequence alignment outperforms likelihood methods in phylogenetics involving highly diverged sequences.
Xia X
Mol Phylogenet Evol; 2016 Sep; 102():331-43. PubMed ID: 27377322
[TBL] [Abstract][Full Text] [Related]
29. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
30. Stratified reconstruction of ancestral Escherichia coli diversification.
Gonzalez-Alba JM; Baquero F; Cantón R; Galán JC
BMC Genomics; 2019 Dec; 20(1):936. PubMed ID: 31805853
[TBL] [Abstract][Full Text] [Related]
31. Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.
Ness RW; Graham SW; Barrett SC
Mol Biol Evol; 2011 Nov; 28(11):3009-18. PubMed ID: 21633114
[TBL] [Abstract][Full Text] [Related]
32. Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study.
Lees JA; Kendall M; Parkhill J; Colijn C; Bentley SD; Harris SR
Wellcome Open Res; 2018; 3():33. PubMed ID: 29774245
[No Abstract] [Full Text] [Related]
33. Detection of recombination in DNA multiple alignments with hidden Markov models.
Husmeier D; Wright F
J Comput Biol; 2001; 8(4):401-27. PubMed ID: 11571075
[TBL] [Abstract][Full Text] [Related]
34. Comparative analyses of whole-genome protein sequences from multiple organisms.
Yokono M; Satoh S; Tanaka A
Sci Rep; 2018 May; 8(1):6800. PubMed ID: 29717164
[TBL] [Abstract][Full Text] [Related]
35. Distance-based genome rearrangement phylogeny.
Wang LS; Warnow T; Moret BM; Jansen RK; Raubeson LA
J Mol Evol; 2006 Oct; 63(4):473-83. PubMed ID: 17021931
[TBL] [Abstract][Full Text] [Related]
36. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities.
Bastien O; Ortet P; Roy S; Maréchal E
BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521
[TBL] [Abstract][Full Text] [Related]
37. A graphical method for detecting recombination in phylogenetic data sets.
McGuire G; Wright F; Prentice MJ
Mol Biol Evol; 1997 Nov; 14(11):1125-31. PubMed ID: 9364770
[TBL] [Abstract][Full Text] [Related]
38. Influence of substitution model selection on protein phylogenetic tree reconstruction.
Del Amparo R; Arenas M
Gene; 2023 May; 865():147336. PubMed ID: 36871672
[TBL] [Abstract][Full Text] [Related]
39. When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes.
Gardner SN; Hall BG
PLoS One; 2013; 8(12):e81760. PubMed ID: 24349125
[TBL] [Abstract][Full Text] [Related]
40. Whole genome/proteome based phylogeny reconstruction for prokaryotes using higher order Markov model and chaos game representation.
Yang WF; Yu ZG; Anh V
Mol Phylogenet Evol; 2016 Mar; 96():102-111. PubMed ID: 26724405
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]