155 related articles for article (PubMed ID: 32395768)
1. RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.
Gavali S; Cowart J; Chen C; Ross KE; Arighi C; Wu CH
Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32395768
[TBL] [Abstract][Full Text] [Related]
2. iPTMnet RESTful API for Post-translational Modification Network Analysis.
Gavali S; Ross KE; Cowart J; Chen C; Wu CH
Methods Mol Biol; 2022; 2499():187-204. PubMed ID: 35696082
[TBL] [Abstract][Full Text] [Related]
3. iPTMnet: an integrated resource for protein post-translational modification network discovery.
Huang H; Arighi CN; Ross KE; Ren J; Li G; Chen SC; Wang Q; Cowart J; Vijay-Shanker K; Wu CH
Nucleic Acids Res; 2018 Jan; 46(D1):D542-D550. PubMed ID: 29145615
[TBL] [Abstract][Full Text] [Related]
4. iPTMnet: Integrative Bioinformatics for Studying PTM Networks.
Ross KE; Huang H; Ren J; Arighi CN; Li G; Tudor CO; Lv M; Lee JY; Chen SC; Vijay-Shanker K; Wu CH
Methods Mol Biol; 2017; 1558():333-353. PubMed ID: 28150246
[TBL] [Abstract][Full Text] [Related]
5. Using EMBL-EBI Services via Web Interface and Programmatically via Web Services.
Madeira F; Madhusoodanan N; Lee J; Eusebi A; Niewielska A; Tivey ARN; Meacham S; Lopez R; Butcher S
Curr Protoc; 2024 Jun; 4(6):e1065. PubMed ID: 38857087
[TBL] [Abstract][Full Text] [Related]
6. piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
Shamsaei B; Chojnacki S; Pilarczyk M; Najafabadi M; Niu W; Chen C; Ross K; Matlock A; Muhlich J; Chutipongtanate S; Zheng J; Turner J; Vidović D; Jaffe J; MacCoss M; Wu C; Pillai A; Ma'ayan A; Schürer S; Kouril M; Medvedovic M; Meller J
Nucleic Acids Res; 2020 Jul; 48(W1):W85-W93. PubMed ID: 32469073
[TBL] [Abstract][Full Text] [Related]
7. BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers.
Bai J; Bandla C; Guo J; Vera Alvarez R; Bai M; Vizcaíno JA; Moreno P; Grüning B; Sallou O; Perez-Riverol Y
J Proteome Res; 2021 Apr; 20(4):2056-2061. PubMed ID: 33625229
[TBL] [Abstract][Full Text] [Related]
8. MPTM: A tool for mining protein post-translational modifications from literature.
Sun D; Wang M; Li A
J Bioinform Comput Biol; 2017 Oct; 15(5):1740005. PubMed ID: 28982288
[TBL] [Abstract][Full Text] [Related]
9. Using ChEMBL web services for building applications and data processing workflows relevant to drug discovery.
Nowotka MM; Gaulton A; Mendez D; Bento AP; Hersey A; Leach A
Expert Opin Drug Discov; 2017 Aug; 12(8):757-767. PubMed ID: 28602100
[TBL] [Abstract][Full Text] [Related]
10. SysPTM: a systematic resource for proteomic research on post-translational modifications.
Li H; Xing X; Ding G; Li Q; Wang C; Xie L; Zeng R; Li Y
Mol Cell Proteomics; 2009 Aug; 8(8):1839-49. PubMed ID: 19366988
[TBL] [Abstract][Full Text] [Related]
11. Integrative annotation and knowledge discovery of kinase post-translational modifications and cancer-associated mutations through federated protein ontologies and resources.
Huang LC; Ross KE; Baffi TR; Drabkin H; Kochut KJ; Ruan Z; D'Eustachio P; McSkimming D; Arighi C; Chen C; Natale DA; Smith C; Gaudet P; Newton AC; Wu C; Kannan N
Sci Rep; 2018 Apr; 8(1):6518. PubMed ID: 29695735
[TBL] [Abstract][Full Text] [Related]
12. PEIMAN 1.0: Post-translational modification Enrichment, Integration and Matching ANalysis.
Nickchi P; Jafari M; Kalantari S
Database (Oxford); 2015; 2015():bav037. PubMed ID: 25911152
[TBL] [Abstract][Full Text] [Related]
13. PyCellBase, an efficient python package for easy retrieval of biological data from heterogeneous sources.
Perez-Gil D; Lopez FJ; Dopazo J; Marin-Garcia P; Rendon A; Medina I
BMC Bioinformatics; 2019 Mar; 20(1):159. PubMed ID: 30922213
[TBL] [Abstract][Full Text] [Related]
14. AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Hosny A; Vera-Licona P; Laubenbacher R; Favre T
Bioinformatics; 2016 Aug; 32(15):2396-8. PubMed ID: 27153722
[TBL] [Abstract][Full Text] [Related]
15. dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins.
Huang KY; Su MG; Kao HJ; Hsieh YC; Jhong JH; Cheng KH; Huang HD; Lee TY
Nucleic Acids Res; 2016 Jan; 44(D1):D435-46. PubMed ID: 26578568
[TBL] [Abstract][Full Text] [Related]
16. Cross-Species PTM Mapping from Phosphoproteomic Data.
Chaudhuri R; Yang JY
Methods Mol Biol; 2017; 1558():459-469. PubMed ID: 28150252
[TBL] [Abstract][Full Text] [Related]
17. Functional analysis tools for post-translational modification: a post-translational modification database for analysis of proteins and metabolic pathways.
Cruz ER; Nguyen H; Nguyen T; Wallace IS
Plant J; 2019 Sep; 99(5):1003-1013. PubMed ID: 31034103
[TBL] [Abstract][Full Text] [Related]
18. BioAfrica's HIV-1 proteomics resource: combining protein data with bioinformatics tools.
Doherty RS; De Oliveira T; Seebregts C; Danaviah S; Gordon M; Cassol S
Retrovirology; 2005 Mar; 2():18. PubMed ID: 15757512
[TBL] [Abstract][Full Text] [Related]
19. PRISMOID: a comprehensive 3D structure database for post-translational modifications and mutations with functional impact.
Li F; Fan C; Marquez-Lago TT; Leier A; Revote J; Jia C; Zhu Y; Smith AI; Webb GI; Liu Q; Wei L; Li J; Song J
Brief Bioinform; 2020 May; 21(3):1069-1079. PubMed ID: 31161204
[TBL] [Abstract][Full Text] [Related]
20. Scalable Text Mining Assisted Curation of Post-Translationally Modified Proteoforms in the Protein Ontology.
Ross KE; Natale DA; Arighi C; Chen SC; Huang H; Li G; Ren J; Wang M; Vijay-Shanker K; Wu CH
CEUR Workshop Proc; 2016 Aug; 1747():. PubMed ID: 28706471
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]