228 related articles for article (PubMed ID: 32396200)
1. Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal.
Etherington GJ; Heavens D; Baker D; Lister A; McNelly R; Garcia G; Clavijo B; Macaulay I; Haerty W; Di Palma F
Gigascience; 2020 May; 9(5):. PubMed ID: 32396200
[TBL] [Abstract][Full Text] [Related]
2. A linked-read approach to museomics: Higher quality de novo genome assemblies from degraded tissues.
Colella JP; Tigano A; MacManes MD
Mol Ecol Resour; 2020 Jul; 20(4):856-870. PubMed ID: 32153100
[TBL] [Abstract][Full Text] [Related]
3. dnAQET: a framework to compute a consolidated metric for benchmarking quality of de novo assemblies.
Yavas G; Hong H; Xiao W
BMC Genomics; 2019 Sep; 20(1):706. PubMed ID: 31510940
[TBL] [Abstract][Full Text] [Related]
4. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.
Faino L; Seidl MF; Datema E; van den Berg GC; Janssen A; Wittenberg AH; Thomma BP
mBio; 2015 Aug; 6(4):. PubMed ID: 26286689
[TBL] [Abstract][Full Text] [Related]
5. scanPAV: a pipeline for extracting presence-absence variations in genome pairs.
Giordano F; Stammnitz MR; Murchison EP; Ning Z
Bioinformatics; 2018 Sep; 34(17):3022-3024. PubMed ID: 29608694
[TBL] [Abstract][Full Text] [Related]
6. CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.
Kuhl H; Li L; Wuertz S; Stöck M; Liang XF; Klopp C
Gigascience; 2020 May; 9(5):. PubMed ID: 32449778
[TBL] [Abstract][Full Text] [Related]
7. SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.
Mariano DC; Pereira FL; Aguiar EL; Oliveira LC; Benevides L; Guimarães LC; Folador EL; Sousa TJ; Ghosh P; Barh D; Figueiredo HC; Silva A; Ramos RT; Azevedo VA
BMC Bioinformatics; 2016 Dec; 17(Suppl 18):456. PubMed ID: 28105921
[TBL] [Abstract][Full Text] [Related]
8. De novo assembly of Dekkera bruxellensis: a multi technology approach using short and long-read sequencing and optical mapping.
Olsen RA; Bunikis I; Tiukova I; Holmberg K; Lötstedt B; Pettersson OV; Passoth V; Käller M; Vezzi F
Gigascience; 2015; 4():56. PubMed ID: 26617983
[TBL] [Abstract][Full Text] [Related]
9. SQUAT: a Sequencing Quality Assessment Tool for data quality assessments of genome assemblies.
Yang LA; Chang YJ; Chen SH; Lin CY; Ho JM
BMC Genomics; 2019 Apr; 19(Suppl 9):238. PubMed ID: 30999844
[TBL] [Abstract][Full Text] [Related]
10. Tigmint: correcting assembly errors using linked reads from large molecules.
Jackman SD; Coombe L; Chu J; Warren RL; Vandervalk BP; Yeo S; Xue Z; Mohamadi H; Bohlmann J; Jones SJM; Birol I
BMC Bioinformatics; 2018 Oct; 19(1):393. PubMed ID: 30367597
[TBL] [Abstract][Full Text] [Related]
11. The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome.
Sakai H; Naito K; Ogiso-Tanaka E; Takahashi Y; Iseki K; Muto C; Satou K; Teruya K; Shiroma A; Shimoji M; Hirano T; Itoh T; Kaga A; Tomooka N
Sci Rep; 2015 Nov; 5():16780. PubMed ID: 26616024
[TBL] [Abstract][Full Text] [Related]
12. ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads.
Coombe L; Warren RL; Wong J; Nikolic V; Birol I
Curr Protoc; 2023 Apr; 3(4):e733. PubMed ID: 37039735
[TBL] [Abstract][Full Text] [Related]
13. Reference-guided de novo assembly approach improves genome reconstruction for related species.
Lischer HEL; Shimizu KK
BMC Bioinformatics; 2017 Nov; 18(1):474. PubMed ID: 29126390
[TBL] [Abstract][Full Text] [Related]
14. A hybrid approach for de novo human genome sequence assembly and phasing.
Mostovoy Y; Levy-Sakin M; Lam J; Lam ET; Hastie AR; Marks P; Lee J; Chu C; Lin C; Džakula Ž; Cao H; Schlebusch SA; Giorda K; Schnall-Levin M; Wall JD; Kwok PY
Nat Methods; 2016 Jul; 13(7):587-90. PubMed ID: 27159086
[TBL] [Abstract][Full Text] [Related]
15. Contiguous and accurate de novo assembly of metazoan genomes with modest long read coverage.
Chakraborty M; Baldwin-Brown JG; Long AD; Emerson JJ
Nucleic Acids Res; 2016 Nov; 44(19):e147. PubMed ID: 27458204
[TBL] [Abstract][Full Text] [Related]
16. Strategies for optimizing BioNano and Dovetail explored through a second reference quality assembly for the legume model, Medicago truncatula.
Moll KM; Zhou P; Ramaraj T; Fajardo D; Devitt NP; Sadowsky MJ; Stupar RM; Tiffin P; Miller JR; Young ND; Silverstein KAT; Mudge J
BMC Genomics; 2017 Aug; 18(1):578. PubMed ID: 28778149
[TBL] [Abstract][Full Text] [Related]
17. From Short Reads to Chromosome-Scale Genome Assemblies.
Fletcher K; Michelmore R
Methods Mol Biol; 2018; 1848():151-197. PubMed ID: 30182236
[TBL] [Abstract][Full Text] [Related]
18. Long Range Sequencing and Validation of Insect Genome Assemblies.
Saha S
Methods Mol Biol; 2019; 1858():33-44. PubMed ID: 30414109
[TBL] [Abstract][Full Text] [Related]
19. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
[TBL] [Abstract][Full Text] [Related]
20. Chromosome-level hybrid de novo genome assemblies as an attainable option for nonmodel insects.
Jaworski CC; Allan CW; Matzkin LM
Mol Ecol Resour; 2020 Sep; 20(5):1277-1293. PubMed ID: 32329220
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
