333 related articles for article (PubMed ID: 32398273)
1. RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses: a first look.
Rangan R; Zheludev IN; Hagey RJ; Pham EA; Wayment-Steele HK; Glenn JS; Das R
RNA; 2020 Aug; 26(8):937-959. PubMed ID: 32398273
[TBL] [Abstract][Full Text] [Related]
2. RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses.
Rangan R; Zheludev IN; Das R
bioRxiv; 2020 Apr; ():. PubMed ID: 32511306
[TBL] [Abstract][Full Text] [Related]
3. Pervasive RNA Secondary Structure in the Genomes of SARS-CoV-2 and Other Coronaviruses.
Simmonds P
mBio; 2020 Oct; 11(6):. PubMed ID: 33127861
[TBL] [Abstract][Full Text] [Related]
4. LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2.
Li S; Zhang H; Zhang L; Liu K; Liu B; Mathews DH; Huang L
Proc Natl Acad Sci U S A; 2021 Dec; 118(52):. PubMed ID: 34887342
[TBL] [Abstract][Full Text] [Related]
5. De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures.
Rangan R; Watkins AM; Chacon J; Kretsch R; Kladwang W; Zheludev IN; Townley J; Rynge M; Thain G; Das R
Nucleic Acids Res; 2021 Apr; 49(6):3092-3108. PubMed ID: 33693814
[TBL] [Abstract][Full Text] [Related]
6. Implications of SARS-CoV-2 Mutations for Genomic RNA Structure and Host microRNA Targeting.
Hosseini Rad Sm A; McLellan AD
Int J Mol Sci; 2020 Jul; 21(13):. PubMed ID: 32645951
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements.
Manfredonia I; Nithin C; Ponce-Salvatierra A; Ghosh P; Wirecki TK; Marinus T; Ogando NS; Snijder EJ; van Hemert MJ; Bujnicki JM; Incarnato D
Nucleic Acids Res; 2020 Dec; 48(22):12436-12452. PubMed ID: 33166999
[TBL] [Abstract][Full Text] [Related]
8. Stability of RNA sequences derived from the coronavirus genome in human cells.
Wakida H; Kawata K; Yamaji Y; Hattori E; Tsuchiya T; Wada Y; Ozaki H; Akimitsu N
Biochem Biophys Res Commun; 2020 Jul; 527(4):993-999. PubMed ID: 32446559
[TBL] [Abstract][Full Text] [Related]
9. Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells.
Lan TCT; Allan MF; Malsick LE; Woo JZ; Zhu C; Zhang F; Khandwala S; Nyeo SSY; Sun Y; Guo JU; Bathe M; Näär A; Griffiths A; Rouskin S
Nat Commun; 2022 Mar; 13(1):1128. PubMed ID: 35236847
[TBL] [Abstract][Full Text] [Related]
10. Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs.
Pollom E; Dang KK; Potter EL; Gorelick RJ; Burch CL; Weeks KM; Swanstrom R
PLoS Pathog; 2013; 9(4):e1003294. PubMed ID: 23593004
[TBL] [Abstract][Full Text] [Related]
11. Coding potential and sequence conservation of SARS-CoV-2 and related animal viruses.
Cagliani R; Forni D; Clerici M; Sironi M
Infect Genet Evol; 2020 Sep; 83():104353. PubMed ID: 32387562
[TBL] [Abstract][Full Text] [Related]
12. Signal hotspot mutations in SARS-CoV-2 genomes evolve as the virus spreads and actively replicates in different parts of the world.
Weber S; Ramirez C; Doerfler W
Virus Res; 2020 Nov; 289():198170. PubMed ID: 32979477
[TBL] [Abstract][Full Text] [Related]
13. Conformational Ensembles of Noncoding Elements in the SARS-CoV-2 Genome from Molecular Dynamics Simulations.
Bottaro S; Bussi G; Lindorff-Larsen K
J Am Chem Soc; 2021 Jun; 143(22):8333-8343. PubMed ID: 34039006
[TBL] [Abstract][Full Text] [Related]
14. Conserved structures and dynamics in 5'-proximal regions of Betacoronavirus RNA genomes.
de Moura TR; Purta E; Bernat A; Martín-Cuevas EM; Kurkowska M; Baulin EF; Mukherjee S; Nowak J; Biela AP; Rawski M; Glatt S; Moreno-Herrero F; Bujnicki JM
Nucleic Acids Res; 2024 Apr; 52(6):3419-3432. PubMed ID: 38426934
[TBL] [Abstract][Full Text] [Related]
15. Mapping of long stretches of highly conserved sequences in over 6 million SARS-CoV-2 genomes.
Kumar A; Kaushal R; Sharma H; Sharma K; Menon MB; P V
Brief Funct Genomics; 2024 May; 23(3):256-264. PubMed ID: 37461194
[TBL] [Abstract][Full Text] [Related]
16. Secondary structure determination of conserved SARS-CoV-2 RNA elements by NMR spectroscopy.
Wacker A; Weigand JE; Akabayov SR; Altincekic N; Bains JK; Banijamali E; Binas O; Castillo-Martinez J; Cetiner E; Ceylan B; Chiu LY; Davila-Calderon J; Dhamotharan K; Duchardt-Ferner E; Ferner J; Frydman L; Fürtig B; Gallego J; Grün JT; Hacker C; Haddad C; Hähnke M; Hengesbach M; Hiller F; Hohmann KF; Hymon D; de Jesus V; Jonker H; Keller H; Knezic B; Landgraf T; Löhr F; Luo L; Mertinkus KR; Muhs C; Novakovic M; Oxenfarth A; Palomino-Schätzlein M; Petzold K; Peter SA; Pyper DJ; Qureshi NS; Riad M; Richter C; Saxena K; Schamber T; Scherf T; Schlagnitweit J; Schlundt A; Schnieders R; Schwalbe H; Simba-Lahuasi A; Sreeramulu S; Stirnal E; Sudakov A; Tants JN; Tolbert BS; Vögele J; Weiß L; Wirmer-Bartoschek J; Wirtz Martin MA; Wöhnert J; Zetzsche H
Nucleic Acids Res; 2020 Dec; 48(22):12415-12435. PubMed ID: 33167030
[TBL] [Abstract][Full Text] [Related]
17. High frequency of transition to transversion ratio in the stem region of RNA secondary structure of untranslated region of SARS-CoV-2.
Dash M; Meher P; Aditya Kumar ; Satapathy SS; Namsa ND
PeerJ; 2024; 12():e16962. PubMed ID: 38666080
[TBL] [Abstract][Full Text] [Related]
18. Comprehensive in vivo secondary structure of the SARS-CoV-2 genome reveals novel regulatory motifs and mechanisms.
Huston NC; Wan H; Strine MS; de Cesaris Araujo Tavares R; Wilen CB; Pyle AM
Mol Cell; 2021 Feb; 81(3):584-598.e5. PubMed ID: 33444546
[TBL] [Abstract][Full Text] [Related]
19. The establishment of reference sequence for SARS-CoV-2 and variation analysis.
Wang C; Liu Z; Chen Z; Huang X; Xu M; He T; Zhang Z
J Med Virol; 2020 Jun; 92(6):667-674. PubMed ID: 32167180
[TBL] [Abstract][Full Text] [Related]
20. Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity.
Islam MR; Hoque MN; Rahman MS; Alam ASMRU; Akther M; Puspo JA; Akter S; Sultana M; Crandall KA; Hossain MA
Sci Rep; 2020 Aug; 10(1):14004. PubMed ID: 32814791
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]