These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

338 related articles for article (PubMed ID: 32424069)

  • 1. MEDEA: analysis of transcription factor binding motifs in accessible chromatin.
    Mariani L; Weinand K; Gisselbrecht SS; Bulyk ML
    Genome Res; 2020 May; 30(5):736-748. PubMed ID: 32424069
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Sequence and chromatin determinants of cell-type-specific transcription factor binding.
    Arvey A; Agius P; Noble WS; Leslie C
    Genome Res; 2012 Sep; 22(9):1723-34. PubMed ID: 22955984
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
    Wang J; Zhuang J; Iyer S; Lin XY; Greven MC; Kim BH; Moore J; Pierce BG; Dong X; Virgil D; Birney E; Hung JH; Weng Z
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D171-6. PubMed ID: 23203885
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Profiling of chromatin accessibility identifies transcription factor binding sites across the genome of Aspergillus species.
    Huang L; Li X; Dong L; Wang B; Pan L
    BMC Biol; 2021 Sep; 19(1):189. PubMed ID: 34488759
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.
    Kähärä J; Lähdesmäki H
    Bioinformatics; 2015 Sep; 31(17):2852-9. PubMed ID: 25957350
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors.
    Wang J; Zhuang J; Iyer S; Lin X; Whitfield TW; Greven MC; Pierce BG; Dong X; Kundaje A; Cheng Y; Rando OJ; Birney E; Myers RM; Noble WS; Snyder M; Weng Z
    Genome Res; 2012 Sep; 22(9):1798-812. PubMed ID: 22955990
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The native cistrome and sequence motif families of the maize ear.
    Savadel SD; Hartwig T; Turpin ZM; Vera DL; Lung PY; Sui X; Blank M; Frommer WB; Dennis JH; Zhang J; Bass HW
    PLoS Genet; 2021 Aug; 17(8):e1009689. PubMed ID: 34383745
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments.
    Kheradpour P; Kellis M
    Nucleic Acids Res; 2014 Mar; 42(5):2976-87. PubMed ID: 24335146
    [TBL] [Abstract][Full Text] [Related]  

  • 9. XL-DNase-seq: improved footprinting of dynamic transcription factors.
    Oh KS; Ha J; Baek S; Sung MH
    Epigenetics Chromatin; 2019 Jun; 12(1):30. PubMed ID: 31164146
    [TBL] [Abstract][Full Text] [Related]  

  • 10. maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
    Cazares TA; Rizvi FW; Iyer B; Chen X; Kotliar M; Bejjani AT; Wayman JA; Donmez O; Wronowski B; Parameswaran S; Kottyan LC; Barski A; Weirauch MT; Prasath VBS; Miraldi ER
    PLoS Comput Biol; 2023 Jan; 19(1):e1010863. PubMed ID: 36719906
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.
    Quach B; Furey TS
    Bioinformatics; 2017 Apr; 33(7):956-963. PubMed ID: 27993786
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection.
    Yardımcı GG; Frank CL; Crawford GE; Ohler U
    Nucleic Acids Res; 2014 Oct; 42(19):11865-78. PubMed ID: 25294828
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Regulatory chromatin landscape in
    Tannenbaum M; Sarusi-Portuguez A; Krispil R; Schwartz M; Loza O; Benichou JIC; Mosquna A; Hakim O
    Plant Methods; 2018; 14():113. PubMed ID: 30598689
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes.
    Lu Z; Hofmeister BT; Vollmers C; DuBois RM; Schmitz RJ
    Nucleic Acids Res; 2017 Apr; 45(6):e41. PubMed ID: 27903897
    [TBL] [Abstract][Full Text] [Related]  

  • 15. TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence.
    Ouyang N; Boyle AP
    Genome Res; 2020 Jul; 30(7):1040-1046. PubMed ID: 32660981
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Uncovering uncharacterized binding of transcription factors from ATAC-seq footprinting data.
    Schultheis H; Bentsen M; Heger V; Looso M
    Sci Rep; 2024 Apr; 14(1):9275. PubMed ID: 38654130
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Predicting transcription factor site occupancy using DNA sequence intrinsic and cell-type specific chromatin features.
    Kumar S; Bucher P
    BMC Bioinformatics; 2016 Jan; 17 Suppl 1(Suppl 1):4. PubMed ID: 26818008
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detecting Differential Transcription Factor Activity from ATAC-Seq Data.
    Tripodi IJ; Allen MA; Dowell RD
    Molecules; 2018 May; 23(5):. PubMed ID: 29748466
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MEME-ChIP: motif analysis of large DNA datasets.
    Machanick P; Bailey TL
    Bioinformatics; 2011 Jun; 27(12):1696-7. PubMed ID: 21486936
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells.
    Wong KC; Li Y; Peng C
    Bioinformatics; 2016 Feb; 32(3):321-4. PubMed ID: 26411866
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 17.