201 related articles for article (PubMed ID: 32437523)
21. Paragraph: a graph-based structural variant genotyper for short-read sequence data.
Chen S; Krusche P; Dolzhenko E; Sherman RM; Petrovski R; Schlesinger F; Kirsche M; Bentley DR; Schatz MC; Sedlazeck FJ; Eberle MA
Genome Biol; 2019 Dec; 20(1):291. PubMed ID: 31856913
[TBL] [Abstract][Full Text] [Related]
22. PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform.
Wang Y; Ling Y; Gong J; Zhao X; Zhou H; Xie B; Lou H; Zhuang X; Jin L; ; Fan S; Zhang G; Xu S
Nucleic Acids Res; 2023 Jan; 51(D1):D1109-D1116. PubMed ID: 36243989
[TBL] [Abstract][Full Text] [Related]
23. Discovery and genotyping of novel sequence insertions in many sequenced individuals.
Kavak P; Lin YY; Numanagic I; Asghari H; Güngör T; Alkan C; Hach F
Bioinformatics; 2017 Jul; 33(14):i161-i169. PubMed ID: 28881988
[TBL] [Abstract][Full Text] [Related]
24. Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes.
Fatima N; Petri A; Gyllensten U; Feuk L; Ameur A
Genes (Basel); 2020 Nov; 11(12):. PubMed ID: 33266238
[TBL] [Abstract][Full Text] [Related]
25. Automated filtering of genome-wide large deletions through an ensemble deep learning framework.
Hu Y; Mangal S; Zhang L; Zhou X
Methods; 2022 Oct; 206():77-86. PubMed ID: 36038049
[TBL] [Abstract][Full Text] [Related]
26. Dysgu: efficient structural variant calling using short or long reads.
Cleal K; Baird DM
Nucleic Acids Res; 2022 May; 50(9):e53. PubMed ID: 35100420
[TBL] [Abstract][Full Text] [Related]
27. A graph clustering algorithm for detection and genotyping of structural variants from long reads.
Gaitán N; Duitama J
Gigascience; 2024 Jan; 13():. PubMed ID: 38206589
[TBL] [Abstract][Full Text] [Related]
28. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
[TBL] [Abstract][Full Text] [Related]
29. PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.
Mahmoud M; Doddapaneni H; Timp W; Sedlazeck FJ
Genome Biol; 2021 Sep; 22(1):268. PubMed ID: 34521442
[TBL] [Abstract][Full Text] [Related]
30. CAPG: comprehensive allopolyploid genotyper.
Kulkarni R; Zhang Y; Cannon SB; Dorman KS
Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36367243
[TBL] [Abstract][Full Text] [Related]
31. Structural Variant Detection from Long-Read Sequencing Data with cuteSV.
Jiang T; Liu S; Cao S; Wang Y
Methods Mol Biol; 2022; 2493():137-151. PubMed ID: 35751813
[TBL] [Abstract][Full Text] [Related]
32. Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing.
Zhou Y; Leung AW; Ahmed SS; Lam TW; Luo R
BMC Bioinformatics; 2022 Nov; 23(1):465. PubMed ID: 36344913
[TBL] [Abstract][Full Text] [Related]
33. Visualization tools for human structural variations identified by whole-genome sequencing.
Yokoyama TT; Kasahara M
J Hum Genet; 2020 Jan; 65(1):49-60. PubMed ID: 31666648
[TBL] [Abstract][Full Text] [Related]
34. GraphTyper2 enables population-scale genotyping of structural variation using pangenome graphs.
Eggertsson HP; Kristmundsdottir S; Beyter D; Jonsson H; Skuladottir A; Hardarson MT; Gudbjartsson DF; Stefansson K; Halldorsson BV; Melsted P
Nat Commun; 2019 Nov; 10(1):5402. PubMed ID: 31776332
[TBL] [Abstract][Full Text] [Related]
35. Genome-wide detection of structural variation in some sheep breeds using whole-genome long-read sequencing data.
Qiao G; Xu P; Guo T; He X; Yue Y; Yang B
J Anim Breed Genet; 2024 Jul; 141(4):403-414. PubMed ID: 38247268
[TBL] [Abstract][Full Text] [Related]
36. Comparison and benchmark of structural variants detected from long read and long-read assembly.
Lin J; Jia P; Wang S; Kosters W; Ye K
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
[TBL] [Abstract][Full Text] [Related]
37. SVDSS: structural variation discovery in hard-to-call genomic regions using sample-specific strings from accurate long reads.
Denti L; Khorsand P; Bonizzoni P; Hormozdiari F; Chikhi R
Nat Methods; 2023 Apr; 20(4):550-558. PubMed ID: 36550274
[TBL] [Abstract][Full Text] [Related]
38. Deciphering the exact breakpoints of structural variations using long sequencing reads with DeBreak.
Chen Y; Wang AY; Barkley CA; Zhang Y; Zhao X; Gao M; Edmonds MD; Chong Z
Nat Commun; 2023 Jan; 14(1):283. PubMed ID: 36650186
[TBL] [Abstract][Full Text] [Related]
39. Noise-cancelling repeat finder: uncovering tandem repeats in error-prone long-read sequencing data.
Harris RS; Cechova M; Makova KD
Bioinformatics; 2019 Nov; 35(22):4809-4811. PubMed ID: 31290946
[TBL] [Abstract][Full Text] [Related]
40. Population-scale detection of non-reference sequence variants using colored de Bruijn graphs.
Krannich T; White WTJ; Niehus S; Holley G; Halldórsson BV; Kehr B
Bioinformatics; 2022 Jan; 38(3):604-611. PubMed ID: 34726732
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
