These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

267 related articles for article (PubMed ID: 32437523)

  • 41. Paragraph: a graph-based structural variant genotyper for short-read sequence data.
    Chen S; Krusche P; Dolzhenko E; Sherman RM; Petrovski R; Schlesinger F; Kirsche M; Bentley DR; Schatz MC; Sedlazeck FJ; Eberle MA
    Genome Biol; 2019 Dec; 20(1):291. PubMed ID: 31856913
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Long-read-based human genomic structural variation detection with cuteSV.
    Jiang T; Liu Y; Jiang Y; Li J; Gao Y; Cui Z; Liu Y; Liu B; Wang Y
    Genome Biol; 2020 Aug; 21(1):189. PubMed ID: 32746918
    [TBL] [Abstract][Full Text] [Related]  

  • 43. PGG.SV: a whole-genome-sequencing-based structural variant resource and data analysis platform.
    Wang Y; Ling Y; Gong J; Zhao X; Zhou H; Xie B; Lou H; Zhuang X; Jin L; ; Fan S; Zhang G; Xu S
    Nucleic Acids Res; 2023 Jan; 51(D1):D1109-D1116. PubMed ID: 36243989
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Comparison of multiple algorithms to reliably detect structural variants in pears.
    Liu Y; Zhang M; Sun J; Chang W; Sun M; Zhang S; Wu J
    BMC Genomics; 2020 Jan; 21(1):61. PubMed ID: 31959124
    [TBL] [Abstract][Full Text] [Related]  

  • 45. Discovery and genotyping of novel sequence insertions in many sequenced individuals.
    Kavak P; Lin YY; Numanagic I; Asghari H; Güngör T; Alkan C; Hach F
    Bioinformatics; 2017 Jul; 33(14):i161-i169. PubMed ID: 28881988
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Characterization of structural variants with single molecule and hybrid sequencing approaches.
    Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
    Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
    [TBL] [Abstract][Full Text] [Related]  

  • 47. Evaluation of Single-Molecule Sequencing Technologies for Structural Variant Detection in Two Swedish Human Genomes.
    Fatima N; Petri A; Gyllensten U; Feuk L; Ameur A
    Genes (Basel); 2020 Nov; 11(12):. PubMed ID: 33266238
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Automated filtering of genome-wide large deletions through an ensemble deep learning framework.
    Hu Y; Mangal S; Zhang L; Zhou X
    Methods; 2022 Oct; 206():77-86. PubMed ID: 36038049
    [TBL] [Abstract][Full Text] [Related]  

  • 49. Structural variant analysis for linked-read sequencing data with gemtools.
    Greer SU; Ji HP
    Bioinformatics; 2019 Nov; 35(21):4397-4399. PubMed ID: 30938757
    [TBL] [Abstract][Full Text] [Related]  

  • 50. Dysgu: efficient structural variant calling using short or long reads.
    Cleal K; Baird DM
    Nucleic Acids Res; 2022 May; 50(9):e53. PubMed ID: 35100420
    [TBL] [Abstract][Full Text] [Related]  

  • 51. MsPAC: a tool for haplotype-phased structural variant detection.
    Rodriguez OL; Ritz A; Sharp AJ; Bashir A
    Bioinformatics; 2020 Feb; 36(3):922-924. PubMed ID: 31397844
    [TBL] [Abstract][Full Text] [Related]  

  • 52. PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.
    Mahmoud M; Doddapaneni H; Timp W; Sedlazeck FJ
    Genome Biol; 2021 Sep; 22(1):268. PubMed ID: 34521442
    [TBL] [Abstract][Full Text] [Related]  

  • 53. CAPG: comprehensive allopolyploid genotyper.
    Kulkarni R; Zhang Y; Cannon SB; Dorman KS
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36367243
    [TBL] [Abstract][Full Text] [Related]  

  • 54. A graph clustering algorithm for detection and genotyping of structural variants from long reads.
    Gaitán N; Duitama J
    Gigascience; 2024 Jan; 13():. PubMed ID: 38206589
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies.
    Talsania K; Shen TW; Chen X; Jaeger E; Li Z; Chen Z; Chen W; Tran B; Kusko R; Wang L; Pang AWC; Yang Z; Choudhari S; Colgan M; Fang LT; Carroll A; Shetty J; Kriga Y; German O; Smirnova T; Liu T; Li J; Kellman B; Hong K; Hastie AR; Natarajan A; Moshrefi A; Granat A; Truong T; Bombardi R; Mankinen V; Meerzaman D; Mason CE; Collins J; Stahlberg E; Xiao C; Wang C; Xiao W; Zhao Y
    Genome Biol; 2022 Dec; 23(1):255. PubMed ID: 36514120
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Discovery and genotyping of structural variation from long-read haploid genome sequence data.
    Huddleston J; Chaisson MJP; Steinberg KM; Warren W; Hoekzema K; Gordon D; Graves-Lindsay TA; Munson KM; Kronenberg ZN; Vives L; Peluso P; Boitano M; Chin CS; Korlach J; Wilson RK; Eichler EE
    Genome Res; 2017 May; 27(5):677-685. PubMed ID: 27895111
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Structural Variant Detection from Long-Read Sequencing Data with cuteSV.
    Jiang T; Liu S; Cao S; Wang Y
    Methods Mol Biol; 2022; 2493():137-151. PubMed ID: 35751813
    [TBL] [Abstract][Full Text] [Related]  

  • 58. lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data.
    Haghshenas E; Sahinalp SC; Hach F
    Bioinformatics; 2019 Jan; 35(1):20-27. PubMed ID: 30561550
    [TBL] [Abstract][Full Text] [Related]  

  • 59. HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data.
    Zhang Z; Liu Y; Li X; Liu Y; Wang Y; Jiang T
    Front Genet; 2024; 15():1435087. PubMed ID: 39045321
    [No Abstract]   [Full Text] [Related]  

  • 60. SKSV: ultrafast structural variation detection from circular consensus sequencing reads.
    Liu Y; Jiang T; Su J; Liu B; Zang T; Wang Y
    Bioinformatics; 2021 Oct; 37(20):3647-3649. PubMed ID: 33963826
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 14.