These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

237 related articles for article (PubMed ID: 32453718)

  • 1. Predicting host taxonomic information from viral genomes: A comparison of feature representations.
    Young F; Rogers S; Robertson DL
    PLoS Comput Biol; 2020 May; 16(5):e1007894. PubMed ID: 32453718
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Prediction of virus-host infectious association by supervised learning methods.
    Zhang M; Yang L; Ren J; Ahlgren NA; Fuhrman JA; Sun F
    BMC Bioinformatics; 2017 Mar; 18(Suppl 3):60. PubMed ID: 28361670
    [TBL] [Abstract][Full Text] [Related]  

  • 3. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prokaryotic virus host predictor: a Gaussian model for host prediction of prokaryotic viruses in metagenomics.
    Lu C; Zhang Z; Cai Z; Zhu Z; Qiu Y; Wu A; Jiang T; Zheng H; Peng Y
    BMC Biol; 2021 Jan; 19(1):5. PubMed ID: 33441133
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Evaluation of the genomic diversity of viruses infecting bacteria, archaea and eukaryotes using a common bioinformatic platform: steps towards a unified taxonomy.
    Aiewsakun P; Adriaenssens EM; Lavigne R; Kropinski AM; Simmonds P
    J Gen Virol; 2018 Sep; 99(9):1331-1343. PubMed ID: 30016225
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Phage hunters: Computational strategies for finding phages in large-scale 'omics datasets.
    Hurwitz BL; Ponsero A; Thornton J; U'Ren JM
    Virus Res; 2018 Jan; 244():110-115. PubMed ID: 29100906
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences.
    Ahlgren NA; Ren J; Lu YY; Fuhrman JA; Sun F
    Nucleic Acids Res; 2017 Jan; 45(1):39-53. PubMed ID: 27899557
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The impact of sequence length and number of sequences on promoter prediction performance.
    Carvalho SG; Guerra-Sá R; de C Merschmann LH
    BMC Bioinformatics; 2015; 16 Suppl 19(Suppl 19):S5. PubMed ID: 26695879
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus.
    Gałan W; Bąk M; Jakubowska M
    Sci Rep; 2019 Mar; 9(1):3436. PubMed ID: 30837511
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bioinformatic Approaches for Comparative Analysis of Viruses.
    Amgarten D; Upton C
    Methods Mol Biol; 2018; 1704():401-417. PubMed ID: 29277875
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Assessment of k-mer spectrum applicability for metagenomic dissimilarity analysis.
    Dubinkina VB; Ischenko DS; Ulyantsev VI; Tyakht AV; Alexeev DG
    BMC Bioinformatics; 2016 Jan; 17():38. PubMed ID: 26774270
    [TBL] [Abstract][Full Text] [Related]  

  • 12. iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria.
    Roux S; Camargo AP; Coutinho FH; Dabdoub SM; Dutilh BE; Nayfach S; Tritt A
    PLoS Biol; 2023 Apr; 21(4):e3002083. PubMed ID: 37083735
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Enhanced regulatory sequence prediction using gapped k-mer features.
    Ghandi M; Lee D; Mohammad-Noori M; Beer MA
    PLoS Comput Biol; 2014 Jul; 10(7):e1003711. PubMed ID: 25033408
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Taxonomy-aware, sequence similarity ranking reliably predicts phage-host relationships.
    Zielezinski A; Barylski J; Karlowski WM
    BMC Biol; 2021 Oct; 19(1):223. PubMed ID: 34625070
    [TBL] [Abstract][Full Text] [Related]  

  • 15. VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment.
    Raju RS; Al Nahid A; Chondrow Dev P; Islam R
    Genomics; 2022 Jul; 114(4):110414. PubMed ID: 35718090
    [TBL] [Abstract][Full Text] [Related]  

  • 16. HostNet: improved sequence representation in deep neural networks for virus-host prediction.
    Ming Z; Chen X; Wang S; Liu H; Yuan Z; Wu M; Xia H
    BMC Bioinformatics; 2023 Dec; 24(1):455. PubMed ID: 38041071
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Virus Pop-Expanding Viral Databases by Protein Sequence Simulation.
    Kende J; Bonomi M; Temmam S; Regnault B; Pérot P; Eloit M; Bigot T
    Viruses; 2023 May; 15(6):. PubMed ID: 37376527
    [TBL] [Abstract][Full Text] [Related]  

  • 18. The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.
    Aiewsakun P; Simmonds P
    Microbiome; 2018 Feb; 6(1):38. PubMed ID: 29458427
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer.
    Zhang Q; Jun SR; Leuze M; Ussery D; Nookaew I
    Sci Rep; 2017 Jan; 7():40712. PubMed ID: 28102365
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Construction of a Comprehensive Database from the Existing Viral Sequences Available from the International Nucleotide Sequence Database Collaboration.
    García-López R
    Methods Mol Biol; 2018; 1838():231-243. PubMed ID: 30129000
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.