These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
279 related articles for article (PubMed ID: 32463457)
1. PolyA-miner: accurate assessment of differential alternative poly-adenylation from 3'Seq data using vector projections and non-negative matrix factorization. Yalamanchili HK; Alcott CE; Ji P; Wagner EJ; Zoghbi HY; Liu Z Nucleic Acids Res; 2020 Jul; 48(12):e69. PubMed ID: 32463457 [TBL] [Abstract][Full Text] [Related]
2. A computational pipeline to infer alternative poly-adenylation from 3' sequencing data. Yalamanchili HK; Elrod ND; Jensen MK; Ji P; Lin A; Wagner EJ; Liu Z Methods Enzymol; 2021; 655():185-204. PubMed ID: 34183121 [TBL] [Abstract][Full Text] [Related]
3. NUDT21 alters glioma migration through differential alternative polyadenylation of LAMC1. Jonnakuti VS; Ji P; Gao Y; Lin A; Chu Y; Elrod N; Huang KL; Li W; Yalamanchili HK; Wagner EJ J Neurooncol; 2023 Jul; 163(3):623-634. PubMed ID: 37389756 [TBL] [Abstract][Full Text] [Related]
4. Application and design considerations for 3'-end sequencing using click-chemistry. Jensen MK; Elrod ND; Yalamanchili HK; Ji P; Lin A; Liu Z; Wagner EJ Methods Enzymol; 2021; 655():1-23. PubMed ID: 34183117 [TBL] [Abstract][Full Text] [Related]
5. Alternative polyadenylation by sequential activation of distal and proximal PolyA sites. Tang P; Yang Y; Li G; Huang L; Wen M; Ruan W; Guo X; Zhang C; Zuo X; Luo D; Xu Y; Fu XD; Zhou Y Nat Struct Mol Biol; 2022 Jan; 29(1):21-31. PubMed ID: 35013598 [TBL] [Abstract][Full Text] [Related]
6. PolyAMiner-Bulk: A Machine Learning Based Bioinformatics Algorithm to Infer and Decode Alternative Polyadenylation Dynamics from bulk RNA-seq data. Jonnakuti VS; Wagner EJ; Maletić-Savatić M; Liu Z; Yalamanchili HK bioRxiv; 2023 Jan; ():. PubMed ID: 36747700 [TBL] [Abstract][Full Text] [Related]
7. Alternative polyadenylation analysis in animals and plants: newly developed strategies for profiling, processing and validation. Zhang Y; Carrion SA; Zhang Y; Zhang X; Zinski AL; Michal JJ; Jiang Z Int J Biol Sci; 2018; 14(12):1709-1714. PubMed ID: 30416385 [TBL] [Abstract][Full Text] [Related]
8. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. Fahmi NA; Ahmed KT; Chang JW; Nassereddeen H; Fan D; Yong J; Zhang W BMC Bioinformatics; 2022 Sep; 23(Suppl 3):396. PubMed ID: 36171568 [TBL] [Abstract][Full Text] [Related]
9. Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation. Hafez D; Ni T; Mukherjee S; Zhu J; Ohler U Bioinformatics; 2013 Jul; 29(13):i108-16. PubMed ID: 23812974 [TBL] [Abstract][Full Text] [Related]
10. Implications of polyadenylation in health and disease. Curinha A; Oliveira Braz S; Pereira-Castro I; Cruz A; Moreira A Nucleus; 2014; 5(6):508-19. PubMed ID: 25484187 [TBL] [Abstract][Full Text] [Related]
11. Pro-inflammatory polarization and colorectal cancer modulate alternative and intronic polyadenylation in primary human macrophages. Wilton J; de Mendonça FL; Pereira-Castro I; Tellier M; Nojima T; Costa AM; Freitas J; Murphy S; Oliveira MJ; Proudfoot NJ; Moreira A Front Immunol; 2023; 14():1182525. PubMed ID: 37359548 [TBL] [Abstract][Full Text] [Related]
12. PolyAMiner-Bulk is a deep learning-based algorithm that decodes alternative polyadenylation dynamics from bulk RNA-seq data. Jonnakuti VS; Wagner EJ; Maletić-Savatić M; Liu Z; Yalamanchili HK Cell Rep Methods; 2024 Feb; 4(2):100707. PubMed ID: 38325383 [TBL] [Abstract][Full Text] [Related]
13. A change-point model for identifying 3'UTR switching by next-generation RNA sequencing. Wang W; Wei Z; Li H Bioinformatics; 2014 Aug; 30(15):2162-70. PubMed ID: 24728858 [TBL] [Abstract][Full Text] [Related]
14. A quantitative atlas of polyadenylation in five mammals. Derti A; Garrett-Engele P; Macisaac KD; Stevens RC; Sriram S; Chen R; Rohl CA; Johnson JM; Babak T Genome Res; 2012 Jun; 22(6):1173-83. PubMed ID: 22454233 [TBL] [Abstract][Full Text] [Related]
15. An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response. Chang JW; Zhang W; Yeh HS; Park M; Yao C; Shi Y; Kuang R; Yong J Nucleic Acids Res; 2018 Jul; 46(12):5996-6008. PubMed ID: 29733382 [TBL] [Abstract][Full Text] [Related]
16. The microRNA target site landscape is a novel molecular feature associating alternative polyadenylation with immune evasion activity in breast cancer. Kim S; Bai Y; Fan Z; Diergaarde B; Tseng GC; Park HJ Brief Bioinform; 2021 May; 22(3):. PubMed ID: 32844230 [TBL] [Abstract][Full Text] [Related]
17. Alternative polyadenylation of single cells delineates cell types and serves as a prognostic marker in early stage breast cancer. Kim N; Chung W; Eum HH; Lee HO; Park WY PLoS One; 2019; 14(5):e0217196. PubMed ID: 31100099 [TBL] [Abstract][Full Text] [Related]
18. Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation. Routh A; Ji P; Jaworski E; Xia Z; Li W; Wagner EJ Nucleic Acids Res; 2017 Jul; 45(12):e112. PubMed ID: 28449108 [TBL] [Abstract][Full Text] [Related]
19. scAPAtrap: identification and quantification of alternative polyadenylation sites from single-cell RNA-seq data. Wu X; Liu T; Ye C; Ye W; Ji G Brief Bioinform; 2021 Jul; 22(4):. PubMed ID: 33142319 [TBL] [Abstract][Full Text] [Related]
20. Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation. Shah A; Mittleman BE; Gilad Y; Li YI Genome Biol; 2021 Oct; 22(1):291. PubMed ID: 34649612 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]