131 related articles for article (PubMed ID: 32474105)
1. Computational studies on nonenzymatic succinimide-formation mechanisms of the aspartic acid residues catalyzed by two water molecules.
Nakayoshi T; Kato K; Fukuyoshi S; Takahashi H; Takahashi O; Kurimoto E; Oda A
Biochim Biophys Acta Proteins Proteom; 2020 Sep; 1868(9):140459. PubMed ID: 32474105
[TBL] [Abstract][Full Text] [Related]
2. Molecular Mechanisms of Succinimide Formation from Aspartic Acid Residues Catalyzed by Two Water Molecules in the Aqueous Phase.
Nakayoshi T; Kato K; Fukuyoshi S; Takahashi O; Kurimoto E; Oda A
Int J Mol Sci; 2021 Jan; 22(2):. PubMed ID: 33419172
[TBL] [Abstract][Full Text] [Related]
3. Phosphate-Catalyzed Succinimide Formation from Asp Residues: A Computational Study of the Mechanism.
Kirikoshi R; Manabe N; Takahashi O
Int J Mol Sci; 2018 Feb; 19(2):. PubMed ID: 29495268
[TBL] [Abstract][Full Text] [Related]
4. Roles of intramolecular and intermolecular hydrogen bonding in a three-water-assisted mechanism of succinimide formation from aspartic acid residues.
Takahashi O; Kirikoshi R; Manabe N
Molecules; 2014 Aug; 19(8):11440-52. PubMed ID: 25093984
[TBL] [Abstract][Full Text] [Related]
5. Comparison of the activation energy barrier for succinimide formation from α- and β-aspartic acid residues obtained from density functional theory calculations.
Nakayoshi T; Kato K; Fukuyoshi S; Takahashi O; Kurimoto E; Oda A
Biochim Biophys Acta Proteins Proteom; 2018 Jul; 1866(7):759-766. PubMed ID: 29305913
[TBL] [Abstract][Full Text] [Related]
6. Acetic acid can catalyze succinimide formation from aspartic acid residues by a concerted bond reorganization mechanism: a computational study.
Takahashi O; Kirikoshi R; Manabe N
Int J Mol Sci; 2015 Jan; 16(1):1613-26. PubMed ID: 25588215
[TBL] [Abstract][Full Text] [Related]
7. Computational studies on the water-catalyzed stereoinversion mechanism of glutamic acid residues in peptides and proteins.
Nakayoshi T; Kato K; Fukuyoshi S; Takahashi O; Kurimoto E; Oda A
Chirality; 2018 May; 30(5):527-535. PubMed ID: 29528512
[TBL] [Abstract][Full Text] [Related]
8. Deamidation of asparagine residues: direct hydrolysis versus succinimide-mediated deamidation mechanisms.
Catak S; Monard G; Aviyente V; Ruiz-López MF
J Phys Chem A; 2009 Feb; 113(6):1111-20. PubMed ID: 19152321
[TBL] [Abstract][Full Text] [Related]
9. Computational modeling of the enolization in a direct mechanism of racemization of the aspartic acid residue.
Takahashi O; Kobayashi K; Oda A
Chem Biodivers; 2010 Jun; 7(6):1630-3. PubMed ID: 20564675
[TBL] [Abstract][Full Text] [Related]
10. Racemization of the Succinimide Intermediate Formed in Proteins and Peptides: A Computational Study of the Mechanism Catalyzed by Dihydrogen Phosphate Ion.
Takahashi O; Kirikoshi R; Manabe N
Int J Mol Sci; 2016 Oct; 17(10):. PubMed ID: 27735868
[TBL] [Abstract][Full Text] [Related]
11. Computational Studies on Water-Catalyzed Mechanisms for Stereoinversion of Glutarimide Intermediates Formed from Glutamic Acid Residues in Aqueous Phase.
Nakayoshi T; Fukuyoshi S; Kato K; Kurimoto E; Oda A
Int J Mol Sci; 2019 May; 20(10):. PubMed ID: 31096657
[TBL] [Abstract][Full Text] [Related]
12. Influence of the conformations of αA-crystallin peptides on the isomerization rates of aspartic acid residues.
Nakayoshi T; Kato K; Kurimoto E; Oda A
Biochim Biophys Acta Proteins Proteom; 2020 Oct; 1868(10):140480. PubMed ID: 32599296
[TBL] [Abstract][Full Text] [Related]
13. Computational study on nonenzymatic peptide bond cleavage at asparagine and aspartic acid.
Catak S; Monard G; Aviyente V; Ruiz-López MF
J Phys Chem A; 2008 Sep; 112(37):8752-61. PubMed ID: 18714962
[TBL] [Abstract][Full Text] [Related]
14. Modeling the enolization of succinimide derivatives, a key step of racemization of aspartic acid residues: importance of a two-H2O mechanism.
Takahashi O; Kobayashi K; Oda A
Chem Biodivers; 2010 Jun; 7(6):1349-56. PubMed ID: 20564551
[TBL] [Abstract][Full Text] [Related]
15. Neighboring side chain effects on asparaginyl and aspartyl degradation: an ab initio study of the relationship between peptide conformation and backbone NH acidity.
Radkiewicz JL; Zipse H; Clarke S; Houk KN
J Am Chem Soc; 2001 Apr; 123(15):3499-506. PubMed ID: 11472122
[TBL] [Abstract][Full Text] [Related]
16. Kinetics of the competitive reactions of isomerization and peptide bond cleavage at l-α- and d-β-aspartyl residues in an αA-crystallin fragment.
Aki K; Okamura E
J Pept Sci; 2017 Jan; 23(1):28-37. PubMed ID: 27905156
[TBL] [Abstract][Full Text] [Related]
17. Effect of adjacent histidine and cysteine residues on the spontaneous degradation of asparaginyl- and aspartyl-containing peptides.
Brennan TV; Clarke S
Int J Pept Protein Res; 1995 Jun; 45(6):547-53. PubMed ID: 7558585
[TBL] [Abstract][Full Text] [Related]
18. Theoretical study on isomerization and peptide bond cleavage at aspartic residue.
Sang-aroon W; Ruangpornvisuti V
J Mol Model; 2013 Sep; 19(9):3627-36. PubMed ID: 23754169
[TBL] [Abstract][Full Text] [Related]
19. A DFT calculation on nonenzymatic degradation of isoaspartic residue.
Sang-Aroon W; Phatchana R; Tontapha S; Ruangpornvisuti V
J Mol Model; 2021 Sep; 27(10):300. PubMed ID: 34570254
[TBL] [Abstract][Full Text] [Related]
20. Formulation considerations for proteins susceptible to asparagine deamidation and aspartate isomerization.
Wakankar AA; Borchardt RT
J Pharm Sci; 2006 Nov; 95(11):2321-36. PubMed ID: 16960822
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]