These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

132 related articles for article (PubMed ID: 32492134)

  • 1. Unipept CLI 2.0: adding support for visualizations and functional annotations.
    Verschaffelt P; Van Thienen P; Van Den Bossche T; Van der Jeugt F; De Tender C; Martens L; Dawyndt P; Mesuere B
    Bioinformatics; 2020 Aug; 36(14):4220-4221. PubMed ID: 32492134
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Unipept web services for metaproteomics analysis.
    Mesuere B; Willems T; Van der Jeugt F; Devreese B; Vandamme P; Dawyndt P
    Bioinformatics; 2016 Jun; 32(11):1746-8. PubMed ID: 26819472
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The Unipept metaproteomics analysis pipeline.
    Mesuere B; Debyser G; Aerts M; Devreese B; Vandamme P; Dawyndt P
    Proteomics; 2015 Apr; 15(8):1437-42. PubMed ID: 25477242
    [TBL] [Abstract][Full Text] [Related]  

  • 4. High-throughput metaproteomics data analysis with Unipept: A tutorial.
    Mesuere B; Van der Jeugt F; Willems T; Naessens T; Devreese B; Martens L; Dawyndt P
    J Proteomics; 2018 Jan; 171():11-22. PubMed ID: 28552653
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool.
    Verschaffelt P; Van Den Bossche T; Martens L; Dawyndt P; Mesuere B
    J Proteome Res; 2021 Apr; 20(4):2005-2009. PubMed ID: 33401902
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Unipept 4.0: Functional Analysis of Metaproteome Data.
    Gurdeep Singh R; Tanca A; Palomba A; Van der Jeugt F; Verschaffelt P; Uzzau S; Martens L; Dawyndt P; Mesuere B
    J Proteome Res; 2019 Feb; 18(2):606-615. PubMed ID: 30465426
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Unipept Visualizations: an interactive visualization library for biological data.
    Verschaffelt P; Collier J; Botzki A; Martens L; Dawyndt P; Mesuere B
    Bioinformatics; 2022 Jan; 38(2):562-563. PubMed ID: 34390575
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Biodiversity Analysis of Metaproteomics Samples with Unipept: A Comprehensive Tutorial.
    Van Den Bossche T; Verschaffelt P; Vande Moortele T; Dawyndt P; Martens L; Mesuere B
    Methods Mol Biol; 2024; 2836():183-215. PubMed ID: 38995542
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics.
    Mesuere B; Van der Jeugt F; Devreese B; Vandamme P; Dawyndt P
    Proteomics; 2016 Sep; 16(17):2313-8. PubMed ID: 27380722
    [TBL] [Abstract][Full Text] [Related]  

  • 10. kegg_pull: a software package for the RESTful access and pulling from the Kyoto Encyclopedia of Gene and Genomes.
    Huckvale E; Moseley HNB
    BMC Bioinformatics; 2023 Mar; 24(1):78. PubMed ID: 36870946
    [TBL] [Abstract][Full Text] [Related]  

  • 11. JASPAR RESTful API: accessing JASPAR data from any programming language.
    Khan A; Mathelier A
    Bioinformatics; 2018 May; 34(9):1612-1614. PubMed ID: 29253085
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for Seamless End-to-End Metaproteomics Data Analysis.
    Van Den Bossche T; Verschaffelt P; Schallert K; Barsnes H; Dawyndt P; Benndorf D; Renard BY; Mesuere B; Martens L; Muth T
    J Proteome Res; 2020 Aug; 19(8):3562-3566. PubMed ID: 32431147
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Programmatic access to logical models in the Cell Collective modeling environment via a REST API.
    Kowal BM; Schreier TR; Dauer JT; Helikar T
    Biosystems; 2016 Jan; 139():12-6. PubMed ID: 26589448
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PipelineDog: a simple and flexible graphic pipeline construction and maintenance tool.
    Zhou A; Zhang Y; Sun Y; Xing J
    Bioinformatics; 2018 May; 34(9):1603-1605. PubMed ID: 29186378
    [TBL] [Abstract][Full Text] [Related]  

  • 15. rbioapi: user-friendly R interface to biologic web services' API.
    Rezwani M; Pourfathollah AA; Noorbakhsh F
    Bioinformatics; 2022 May; 38(10):2952-2953. PubMed ID: 35561170
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Tibanna: software for scalable execution of portable pipelines on the cloud.
    Lee S; Johnson J; Vitzthum C; Kırlı K; Alver BH; Park PJ
    Bioinformatics; 2019 Nov; 35(21):4424-4426. PubMed ID: 31077294
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Survey of metaproteomics software tools for functional microbiome analysis.
    Sajulga R; Easterly C; Riffle M; Mesuere B; Muth T; Mehta S; Kumar P; Johnson J; Gruening BA; Schiebenhoefer H; Kolmeder CA; Fuchs S; Nunn BL; Rudney J; Griffin TJ; Jagtap PD
    PLoS One; 2020; 15(11):e0241503. PubMed ID: 33170893
    [TBL] [Abstract][Full Text] [Related]  

  • 18. GlyGen data model and processing workflow.
    Kahsay R; Vora J; Navelkar R; Mousavi R; Fochtman BC; Holmes X; Pattabiraman N; Ranzinger R; Mahadik R; Williamson T; Kulkarni S; Agarwal G; Martin M; Vasudev P; Garcia L; Edwards N; Zhang W; Natale DA; Ross K; Aoki-Kinoshita KF; Campbell MP; York WS; Mazumder R
    Bioinformatics; 2020 Jun; 36(12):3941-3943. PubMed ID: 32324859
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MegaGO: A Fast Yet Powerful Approach to Assess Functional Gene Ontology Similarity across Meta-Omics Data Sets.
    Verschaffelt P; Van Den Bossche T; Gabriel W; Burdukiewicz M; Soggiu A; Martens L; Renard BY; Schiebenhoefer H; Mesuere B
    J Proteome Res; 2021 Apr; 20(4):2083-2088. PubMed ID: 33661648
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples.
    Mesuere B; Devreese B; Debyser G; Aerts M; Vandamme P; Dawyndt P
    J Proteome Res; 2012 Dec; 11(12):5773-80. PubMed ID: 23153116
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.