183 related articles for article (PubMed ID: 32500917)
1. Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments.
Neuwald AF; Lanczycki CJ; Hodges TK; Marchler-Bauer A
Database (Oxford); 2020 Jan; 2020():. PubMed ID: 32500917
[TBL] [Abstract][Full Text] [Related]
2. Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.
Neuwald AF
Bioinformatics; 2009 Aug; 25(15):1869-75. PubMed ID: 19505947
[TBL] [Abstract][Full Text] [Related]
3. PROMALS3D: a tool for multiple protein sequence and structure alignments.
Pei J; Kim BH; Grishin NV
Nucleic Acids Res; 2008 Apr; 36(7):2295-300. PubMed ID: 18287115
[TBL] [Abstract][Full Text] [Related]
4. Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties.
Neuwald AF; Altschul SF
PLoS Comput Biol; 2016 May; 12(5):e1004936. PubMed ID: 27192614
[TBL] [Abstract][Full Text] [Related]
5. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
Sauder JM; Arthur JW; Dunbrack RL
Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
[TBL] [Abstract][Full Text] [Related]
6. eCOMPASS: evaluative comparison of multiple protein alignments by statistical score.
Neuwald AF; Kolaczkowski BD; Altschul SF
Bioinformatics; 2021 Oct; 37(20):3456-3463. PubMed ID: 33983436
[TBL] [Abstract][Full Text] [Related]
7. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
8. Making automated multiple alignments of very large numbers of protein sequences.
Sievers F; Dineen D; Wilm A; Higgins DG
Bioinformatics; 2013 Apr; 29(8):989-95. PubMed ID: 23428640
[TBL] [Abstract][Full Text] [Related]
9. Identifying functionally informative evolutionary sequence profiles.
Gil N; Fiser A
Bioinformatics; 2018 Apr; 34(8):1278-1286. PubMed ID: 29211823
[TBL] [Abstract][Full Text] [Related]
10. MergeAlign: improving multiple sequence alignment performance by dynamic reconstruction of consensus multiple sequence alignments.
Collingridge PW; Kelly S
BMC Bioinformatics; 2012 May; 13():117. PubMed ID: 22646090
[TBL] [Abstract][Full Text] [Related]
11. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
12. SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes.
Pruesse E; Peplies J; Glöckner FO
Bioinformatics; 2012 Jul; 28(14):1823-9. PubMed ID: 22556368
[TBL] [Abstract][Full Text] [Related]
13. OD-seq: outlier detection in multiple sequence alignments.
Jehl P; Sievers F; Higgins DG
BMC Bioinformatics; 2015 Aug; 16():269. PubMed ID: 26303676
[TBL] [Abstract][Full Text] [Related]
14. SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation.
Anderson CL; Strope CL; Moriyama EN
BMC Bioinformatics; 2011 May; 12():184. PubMed ID: 21600033
[TBL] [Abstract][Full Text] [Related]
15. AQUA: automated quality improvement for multiple sequence alignments.
Muller J; Creevey CJ; Thompson JD; Arendt D; Bork P
Bioinformatics; 2010 Jan; 26(2):263-5. PubMed ID: 19926669
[TBL] [Abstract][Full Text] [Related]
16. COMPASS server for remote homology inference.
Sadreyev RI; Tang M; Kim BH; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W653-8. PubMed ID: 17517780
[TBL] [Abstract][Full Text] [Related]
17. Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map.
Ezawa K
BMC Bioinformatics; 2016 Mar; 17():133. PubMed ID: 26992851
[TBL] [Abstract][Full Text] [Related]
18. PFASUM: a substitution matrix from Pfam structural alignments.
Keul F; Hess M; Goesele M; Hamacher K
BMC Bioinformatics; 2017 Jun; 18(1):293. PubMed ID: 28583067
[TBL] [Abstract][Full Text] [Related]
19. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
Terashi G; Takeda-Shitaka M
PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
[TBL] [Abstract][Full Text] [Related]
20. Mind the gaps: evidence of bias in estimates of multiple sequence alignments.
Golubchik T; Wise MJ; Easteal S; Jermiin LS
Mol Biol Evol; 2007 Nov; 24(11):2433-42. PubMed ID: 17709332
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]