BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

446 related articles for article (PubMed ID: 32502143)

  • 1. Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.
    Hu Y; Wang K; Li M
    PLoS Comput Biol; 2020 Jun; 16(6):e1007925. PubMed ID: 32502143
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using BRIE to Detect and Analyze Splicing Isoforms in scRNA-Seq Data.
    Huang Y; Sanguinetti G
    Methods Mol Biol; 2019; 1935():175-185. PubMed ID: 30758827
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PennDiff: detecting differential alternative splicing and transcription by RNA sequencing.
    Hu Y; Lin J; Hu J; Hu G; Wang K; Zhang H; Reilly MP; Li M
    Bioinformatics; 2018 Jul; 34(14):2384-2391. PubMed ID: 29474557
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Emergence of Bias During the Synthesis and Amplification of cDNA for scRNA-seq.
    Luo Q; Zhang H
    Adv Exp Med Biol; 2018; 1068():149-158. PubMed ID: 29943302
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Gene length and detection bias in single cell RNA sequencing protocols.
    Phipson B; Zappia L; Oshlack A
    F1000Res; 2017; 6():595. PubMed ID: 28529717
    [No Abstract]   [Full Text] [Related]  

  • 6. RNA-Seq Analysis of Differential Splice Junction Usage and Intron Retentions by DEXSeq.
    Li Y; Rao X; Mattox WW; Amos CI; Liu B
    PLoS One; 2015; 10(9):e0136653. PubMed ID: 26327458
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DECENT: differential expression with capture efficiency adjustmeNT for single-cell RNA-seq data.
    Ye C; Speed TP; Salim A
    Bioinformatics; 2019 Dec; 35(24):5155-5162. PubMed ID: 31197307
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers.
    Townes FW; Irizarry RA
    Genome Biol; 2020 Jul; 21(1):160. PubMed ID: 32620142
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SwarnSeq: An improved statistical approach for differential expression analysis of single-cell RNA-seq data.
    Das S; Rai SN
    Genomics; 2021 May; 113(3):1308-1324. PubMed ID: 33662531
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A multitask clustering approach for single-cell RNA-seq analysis in Recessive Dystrophic Epidermolysis Bullosa.
    Zhang H; Lee CAA; Li Z; Garbe JR; Eide CR; Petegrosso R; Kuang R; Tolar J
    PLoS Comput Biol; 2018 Apr; 14(4):e1006053. PubMed ID: 29630593
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Obstacles to detecting isoforms using full-length scRNA-seq data.
    Westoby J; Artemov P; Hemberg M; Ferguson-Smith A
    Genome Biol; 2020 Mar; 21(1):74. PubMed ID: 32293520
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data.
    Jia C; Hu Y; Kelly D; Kim J; Li M; Zhang NR
    Nucleic Acids Res; 2017 Nov; 45(19):10978-10988. PubMed ID: 29036714
    [TBL] [Abstract][Full Text] [Related]  

  • 13. JingleBells: A Repository of Immune-Related Single-Cell RNA-Sequencing Datasets.
    Ner-Gaon H; Melchior A; Golan N; Ben-Haim Y; Shay T
    J Immunol; 2017 May; 198(9):3375-3379. PubMed ID: 28416714
    [TBL] [Abstract][Full Text] [Related]  

  • 14. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SCC: an accurate imputation method for scRNA-seq dropouts based on a mixture model.
    Zheng Y; Zhong Y; Hu J; Shang X
    BMC Bioinformatics; 2021 Jan; 22(1):5. PubMed ID: 33407064
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Coverage-dependent bias creates the appearance of binary splicing in single cells.
    Buen Abad Najar CF; Yosef N; Lareau LF
    Elife; 2020 Jun; 9():. PubMed ID: 32597758
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Full-Length Single-Cell RNA-Sequencing with FLASH-seq.
    Hahaut V; Picelli S
    Methods Mol Biol; 2023; 2584():123-164. PubMed ID: 36495447
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BRIE: transcriptome-wide splicing quantification in single cells.
    Huang Y; Sanguinetti G
    Genome Biol; 2017 Jun; 18(1):123. PubMed ID: 28655331
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Cell-level somatic mutation detection from single-cell RNA sequencing.
    Vu TN; Nguyen HN; Calza S; Kalari KR; Wang L; Pawitan Y
    Bioinformatics; 2019 Nov; 35(22):4679-4687. PubMed ID: 31028395
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.