160 related articles for article (PubMed ID: 32510176)
1. ProTrack: An Interactive Multi-Omics Data Browser for Proteogenomic Studies.
Calinawan AP; Song X; Ji J; Dhanasekaran SM; Petralia F; Wang P; Reva B
Proteomics; 2020 Nov; 20(21-22):e1900359. PubMed ID: 32510176
[TBL] [Abstract][Full Text] [Related]
2. A User-Friendly Visualization Tool for Multi-Omics Data.
Huh S; Kim MS
Proteomics; 2020 Nov; 20(21-22):e2000136. PubMed ID: 32744797
[TBL] [Abstract][Full Text] [Related]
3. ProNetView-ccRCC: A Web-Based Portal to Interactively Explore Clear Cell Renal Cell Carcinoma Proteogenomics Networks.
Kalayci S; Petralia F; Wang P; Gümüş ZH
Proteomics; 2020 Nov; 20(21-22):e2000043. PubMed ID: 32358997
[TBL] [Abstract][Full Text] [Related]
4. Proteogenomic data and resources for pan-cancer analysis.
Li Y; Dou Y; Da Veiga Leprevost F; Geffen Y; Calinawan AP; Aguet F; Akiyama Y; Anand S; Birger C; Cao S; Chaudhary R; Chilappagari P; Cieslik M; Colaprico A; Zhou DC; Day C; Domagalski MJ; Esai Selvan M; Fenyö D; Foltz SM; Francis A; Gonzalez-Robles T; Gümüş ZH; Heiman D; Holck M; Hong R; Hu Y; Jaehnig EJ; Ji J; Jiang W; Katsnelson L; Ketchum KA; Klein RJ; Lei JT; Liang WW; Liao Y; Lindgren CM; Ma W; Ma L; MacCoss MJ; Martins Rodrigues F; McKerrow W; Nguyen N; Oldroyd R; Pilozzi A; Pugliese P; Reva B; Rudnick P; Ruggles KV; Rykunov D; Savage SR; Schnaubelt M; Schraink T; Shi Z; Singhal D; Song X; Storrs E; Terekhanova NV; Thangudu RR; Thiagarajan M; Wang LB; Wang JM; Wang Y; Wen B; Wu Y; Wyczalkowski MA; Xin Y; Yao L; Yi X; Zhang H; Zhang Q; Zuhl M; Getz G; Ding L; Nesvizhskii AI; Wang P; Robles AI; Zhang B; Payne SH;
Cancer Cell; 2023 Aug; 41(8):1397-1406. PubMed ID: 37582339
[TBL] [Abstract][Full Text] [Related]
5. Simplified and Unified Access to Cancer Proteogenomic Data.
Lindgren CM; Adams DW; Kimball B; Boekweg H; Tayler S; Pugh SL; Payne SH
J Proteome Res; 2021 Apr; 20(4):1902-1910. PubMed ID: 33560848
[TBL] [Abstract][Full Text] [Related]
6. Integration and Analysis of CPTAC Proteomics Data in the Context of Cancer Genomics in the cBioPortal.
Wu P; Heins ZJ; Muller JT; Katsnelson L; de Bruijn I; Abeshouse AA; Schultz N; Fenyö D; Gao J
Mol Cell Proteomics; 2019 Sep; 18(9):1893-1898. PubMed ID: 31308250
[TBL] [Abstract][Full Text] [Related]
7. A proteogenomics data-driven knowledge base of human cancer.
Liao Y; Savage SR; Dou Y; Shi Z; Yi X; Jiang W; Lei JT; Zhang B
Cell Syst; 2023 Sep; 14(9):777-787.e5. PubMed ID: 37619559
[TBL] [Abstract][Full Text] [Related]
8. Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.
McGowan T; Johnson JE; Kumar P; Sajulga R; Mehta S; Jagtap PD; Griffin TJ
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32236523
[TBL] [Abstract][Full Text] [Related]
9. Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer.
Song E; Gao Y; Wu C; Shi T; Nie S; Fillmore TL; Schepmoes AA; Gritsenko MA; Qian WJ; Smith RD; Rodland KD; Liu T
Sci Data; 2017 Jul; 4():170091. PubMed ID: 28722704
[TBL] [Abstract][Full Text] [Related]
10. A Description of the Clinical Proteomic Tumor Analysis Consortium (CPTAC) Common Data Analysis Pipeline.
Rudnick PA; Markey SP; Roth J; Mirokhin Y; Yan X; Tchekhovskoi DV; Edwards NJ; Thangudu RR; Ketchum KA; Kinsinger CR; Mesri M; Rodriguez H; Stein SE
J Proteome Res; 2016 Mar; 15(3):1023-32. PubMed ID: 26860878
[TBL] [Abstract][Full Text] [Related]
11. Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
Lin YY; Gawronski A; Hach F; Li S; Numanagic I; Sarrafi I; Mishra S; McPherson A; Collins CC; Radovich M; Tang H; Sahinalp SC
Bioinformatics; 2018 May; 34(10):1672-1681. PubMed ID: 29267878
[TBL] [Abstract][Full Text] [Related]
12. TCGA-assembler 2: software pipeline for retrieval and processing of TCGA/CPTAC data.
Wei L; Jin Z; Yang S; Xu Y; Zhu Y; Ji Y
Bioinformatics; 2018 May; 34(9):1615-1617. PubMed ID: 29272348
[TBL] [Abstract][Full Text] [Related]
13. Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer.
Woo S; Cha SW; Bonissone S; Na S; Tabb DL; Pevzner PA; Bafna V
J Proteome Res; 2015 Sep; 14(9):3555-67. PubMed ID: 26139413
[TBL] [Abstract][Full Text] [Related]
14. LinkedOmics: analyzing multi-omics data within and across 32 cancer types.
Vasaikar SV; Straub P; Wang J; Zhang B
Nucleic Acids Res; 2018 Jan; 46(D1):D956-D963. PubMed ID: 29136207
[TBL] [Abstract][Full Text] [Related]
15. Proteogenomic studies on cancer drug resistance: towards biomarker discovery and target identification.
Fu S; Liu X; Luo M; Xie K; Nice EC; Zhang H; Huang C
Expert Rev Proteomics; 2017 Apr; 14(4):351-362. PubMed ID: 28276747
[TBL] [Abstract][Full Text] [Related]
16. Connecting omics signatures and revealing biological mechanisms with iLINCS.
Pilarczyk M; Fazel-Najafabadi M; Kouril M; Shamsaei B; Vasiliauskas J; Niu W; Mahi N; Zhang L; Clark NA; Ren Y; White S; Karim R; Xu H; Biesiada J; Bennett MF; Davidson SE; Reichard JF; Roberts K; Stathias V; Koleti A; Vidovic D; Clarke DJB; Schürer SC; Ma'ayan A; Meller J; Medvedovic M
Nat Commun; 2022 Aug; 13(1):4678. PubMed ID: 35945222
[TBL] [Abstract][Full Text] [Related]
17. Bridging the Chromosome-centric and Biology/Disease-driven Human Proteome Projects: Accessible and Automated Tools for Interpreting the Biological and Pathological Impact of Protein Sequence Variants Detected via Proteogenomics.
Sajulga R; Mehta S; Kumar P; Johnson JE; Guerrero CR; Ryan MC; Karchin R; Jagtap PD; Griffin TJ
J Proteome Res; 2018 Dec; 17(12):4329-4336. PubMed ID: 30130115
[TBL] [Abstract][Full Text] [Related]
18. The CPTAC Data Portal: A Resource for Cancer Proteomics Research.
Edwards NJ; Oberti M; Thangudu RR; Cai S; McGarvey PB; Jacob S; Madhavan S; Ketchum KA
J Proteome Res; 2015 Jun; 14(6):2707-13. PubMed ID: 25873244
[TBL] [Abstract][Full Text] [Related]
19. Proteogenomic Tools and Approaches to Explore Protein Coding Landscapes of Eukaryotic Genomes.
Kumar D; Dash D
Adv Exp Med Biol; 2016; 926():1-10. PubMed ID: 27686802
[TBL] [Abstract][Full Text] [Related]
20. Pharmaco-proteogenomic characterization of liver cancer organoids for precision oncology.
Ji S; Feng L; Fu Z; Wu G; Wu Y; Lin Y; Lu D; Song Y; Cui P; Yang Z; Sang C; Song G; Cai S; Li Y; Lin H; Zhang S; Wang X; Qiu S; Zhang X; Hua G; Li J; Zhou J; Dai Z; Wang X; Ding L; Wang P; Gao D; Zhang B; Rodriguez H; Fan J; Clevers H; Zhou H; Sun Y; Gao Q
Sci Transl Med; 2023 Jul; 15(706):eadg3358. PubMed ID: 37494474
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
